Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    33   0.13 
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   2.8  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   3.7  

>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
 Frame = +2

Query: 257 SLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAID 436
           +LKKVD+I+   +Q   E S+P+  P   T+    +  +P   + P +PP P        
Sbjct: 124 NLKKVDDIEAAILQAVIESSSPE-PPRSSTHRQRIHRIRPGHRIRP-SPPAP-------- 173

Query: 437 YILAHPPKTETVKKL*IQKI--QSTTPPPKKSGLYFEHHTLSISITSDSQMN 586
                PP+ + +++  ++ +   ST+  P+ S L  E  T ++S T+ ++++
Sbjct: 174 -----PPRVDAIEEAVLRAVLEVSTSIAPETSSLEAEAETTTVSETTTTEVS 220


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 392 PVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTPPPKKS 526
           P+ PP+PE I   +  +LA  P   +V K   +K  +   PP+ S
Sbjct: 57  PIPPPLPEPIPELVQILLAAEPNKPSVPKRSNRKKLTYKQPPRNS 101


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 371  QPQSELLPVAPPMP--EAIRRAIDYILAHPPKTETVKKL*IQKIQSTTPPPKKSGLYFEH 544
            Q Q+  +P  PP P    ++     +  +  + + +  +    +QS  PPP K GL    
Sbjct: 879  QQQAGRIPPRPPNPILNQVQNPPQQVQHNQHQNQMLNPIRQPLLQSPPPPPPKKGLIEHK 938

Query: 545  HTLSISITSD 574
            +T  + ITS+
Sbjct: 939  NTDLVLITSE 948


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +2

Query: 389 LPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQKIQSTTPPPKKSGLYFEHHTLSISIT 568
           LP  PP  E I+R   Y+   P        L   ++++  PPP  +    +  TL +S  
Sbjct: 165 LPSVPPSKERIKRIPSYLKPTPAPRSMSATLPRARLKTPPPPPPVTN---QFDTLPVSFR 221

Query: 569 SDS 577
           S S
Sbjct: 222 SSS 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,829
Number of Sequences: 27780
Number of extensions: 239247
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)