Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30004
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 85 3e-17
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 78 4e-15
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 61 5e-10
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.3
12_01_0819 + 7545656-7546006,7546087-7546162,7547196-7547401,754... 29 1.7
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.3
09_04_0201 + 15543318-15543488,15543956-15544069 29 3.0
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 28 4.0
04_01_0053 + 551027-553024 28 4.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.9
10_01_0318 + 3493913-3496976,3497064-3497392 27 9.1
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 27 9.1
03_02_0090 - 5564326-5567280 27 9.1
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 9.1
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/71 (59%), Positives = 49/71 (69%)
Frame = +3
Query: 249 CWKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 428
C K YVY+AK ++ GG T R IWGKVTRPHGNSG VRAKFKSNLP +MG
Sbjct: 50 CGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGR 101
Query: 429 RIRVMLYPSRI 461
++RV +YPS I
Sbjct: 102 KVRVFMYPSSI 112
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
RLY + GYKR NQ+ENT+L+++EG + + +Y G
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCG 51
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 78.2 bits (184), Expect = 4e-15
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++
Sbjct: 51 KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKV 102
Query: 435 RVMLYPSRI 461
RV +YPS I
Sbjct: 103 RVFMYPSSI 111
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 109 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAG
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAG 50
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 422
K YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 51 KRIAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 109 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAG
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAG 50
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 436 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 302
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>12_01_0819 +
7545656-7546006,7546087-7546162,7547196-7547401,
7547498-7547584,7547673-7547765,7548172-7548326,
7548470-7548554,7548632-7548718,7548801-7548920,
7549707-7549808,7549903-7550070
Length = 509
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 290 PLLSSVHIDAMLPA*KTASLRSFAPSTLRRAVFSCWLRRPRLYPVNTA 147
P L + H D +LP+ A+ + ST FS WLR L P A
Sbjct: 43 PRLVACHADTLLPSSSPAAAAAACASTASANGFSDWLREHGLPPGKVA 90
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 455 GRIQHHSYSVSHSLGREVRLE 393
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 361 GRVTLPQIARSLVFLPRGPPGIGVLFL 281
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 326 GFFATGTSGNWCPLLSSVHI 267
GFFA G+WC LL+ ++I
Sbjct: 171 GFFAAAIIGSWCNLLTVIYI 190
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -1
Query: 368 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 279
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 313 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 444
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 430 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 269
LC + +G + LA LPEL ++ ++ + P PP G+++L+LY+
Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234
>03_02_0306 +
7290086-7290283,7290998-7291154,7291270-7291377,
7291494-7291621,7291733-7291861,7291945-7292012,
7292130-7292361
Length = 339
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -1
Query: 449 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 309
I H + + H R+ ++ + W G L P+S +L FF G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294
>03_02_0090 - 5564326-5567280
Length = 984
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = -2
Query: 385 RTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT*TQCFQHKRL 239
RT PC + RSL L RG P I L + QC+ +RL
Sbjct: 896 RTPTTFPCLKTLAVHGMRSLACLCRGVPAISFPALEILEVGQCYALRRL 944
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 242 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 108
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,552
Number of Sequences: 37544
Number of extensions: 317380
Number of successful extensions: 917
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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