Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30004
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 106 4e-23
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 106 4e-23
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 106 4e-23
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 106 4e-23
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 106 4e-23
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 103 3e-22
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 68 2e-11
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.016
AK055778-1|BAB71011.1| 1113|Homo sapiens protein ( Homo sapiens ... 31 1.9
AF391558-1|AAO13803.1| 1192|Homo sapiens myosin IIIB variant MYO... 31 1.9
AF391557-1|AAO13802.1| 1275|Homo sapiens myosin IIIB variant MYO... 31 1.9
AF391556-1|AAO13801.1| 1314|Homo sapiens myosin IIIB variant MYO... 31 1.9
AF391555-1|AAO13800.1| 1341|Homo sapiens myosin IIIB variant MYO... 31 1.9
AF391554-1|AAO13799.1| 1251|Homo sapiens myosin IIIB variant MYO... 31 1.9
AF369908-1|AAL57233.1| 1278|Homo sapiens myosin IIIB protein. 31 1.9
AC114794-1|AAY24159.1| 249|Homo sapiens unknown protein. 31 1.9
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 5.7
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 106 bits (255), Expect = 4e-23
Identities = 50/69 (72%), Positives = 54/69 (78%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 106 bits (255), Expect = 4e-23
Identities = 50/69 (72%), Positives = 54/69 (78%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 106 bits (255), Expect = 4e-23
Identities = 50/69 (72%), Positives = 54/69 (78%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 106 bits (255), Expect = 4e-23
Identities = 50/69 (72%), Positives = 54/69 (78%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 106 bits (255), Expect = 4e-23
Identities = 50/69 (72%), Positives = 54/69 (78%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 103 bits (248), Expect = 3e-22
Identities = 49/69 (71%), Positives = 53/69 (76%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
K C YVY+AK T PGG K K R IWGKVTR HGNSG V AKF+SNLPA+A+GHRI
Sbjct: 45 KRCAYVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHRI 101
Query: 435 RVMLYPSRI 461
RVMLYPSRI
Sbjct: 102 RVMLYPSRI 110
Score = 63.3 bits (147), Expect = 5e-10
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY G
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG 44
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 67.7 bits (158), Expect = 2e-11
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = +3
Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 419
K C VY+AK T IPG K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 44 KRCACVYKAKSNTMIPGS---KPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
Score = 54.8 bits (126), Expect = 2e-07
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ FY G
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLG 43
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.016
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1
Query: 130 GRLYAKAVFTGYKRGLRNQ 186
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>AK055778-1|BAB71011.1| 1113|Homo sapiens protein ( Homo sapiens
cDNA FLJ31216 fis, clone KIDNE2004084, moderately
similar to Morone saxatilis myosin heavy chain FM3A
(FM3A) mRNA. ).
Length = 1113
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 192 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 248
>AF391558-1|AAO13803.1| 1192|Homo sapiens myosin IIIB variant
MYO3B.5 protein.
Length = 1192
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AF391557-1|AAO13802.1| 1275|Homo sapiens myosin IIIB variant
MYO3B.4 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AF391556-1|AAO13801.1| 1314|Homo sapiens myosin IIIB variant
MYO3B.3 protein.
Length = 1314
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AF391555-1|AAO13800.1| 1341|Homo sapiens myosin IIIB variant
MYO3B.2 protein.
Length = 1341
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AF391554-1|AAO13799.1| 1251|Homo sapiens myosin IIIB variant
MYO3B.1 protein.
Length = 1251
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AF369908-1|AAL57233.1| 1278|Homo sapiens myosin IIIB protein.
Length = 1278
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>AC114794-1|AAY24159.1| 249|Homo sapiens unknown protein.
Length = 249
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 203 SSRLKEQKTVMMQSFMLEALRLCVQS*EEDTNSRRSPWQKNQAACYLGQGDPPTWQL 373
S+RL+ +V +M + C Q + ++R W A LG GDPP + +
Sbjct: 183 STRLRRNTSVGTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDM 239
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 5.7
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 356 GHLAPDSTQLGFF-ATGTSGNWCPLLSSVH 270
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,599,051
Number of Sequences: 237096
Number of extensions: 1786333
Number of successful extensions: 8873
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8866
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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