Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30004
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    84   7e-17
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    28   4.7  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    28   4.7  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K  VY+Y+A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RI
Sbjct: 58  KRVVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRI 115

Query: 435 RVMLYPSRI 461
           RV+LYPS I
Sbjct: 116 RVLLYPSNI 124



 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = +1

Query: 100 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAG
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAG 57


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 401 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAML 255
           ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+L
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAIL 888


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 401  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAML 255
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+L
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAIL 999


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 460 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 365
           +L+G S+ RI    AW   +D+ +  T P  P
Sbjct: 38  VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,106
Number of Sequences: 27780
Number of extensions: 238109
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)