Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30003
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.6  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 524 SLYIFGNSVS*SSCGWYLRCAEQTSWSRFRRVPG 423
           +LY+   SV   S GW+     +TS+  F R  G
Sbjct: 9   TLYLIPVSVILISVGWWENFVSETSYLPFIRALG 42


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 524 SLYIFGNSVS*SSCGWYLRCAEQTSWSRFRRVPG 423
           +LY+   SV   S GW+     +TS+  F R  G
Sbjct: 242 TLYLIPVSVILISVGWWENFVSETSYLPFIRALG 275


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 524 SLYIFGNSVS*SSCGWYLRCAEQTSWSRFRRVPG 423
           +LY+   SV   S GW+     +TS+  F R  G
Sbjct: 242 TLYLIPVSVILISVGWWENFVSETSYLPFIRALG 275


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 412 PMFIVKAYLPVNESFGFT 359
           P F      P+N SF FT
Sbjct: 629 PTFTALGLFPINGSFAFT 646


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 395 LHNEHRCTCHLGLF 436
           +H  H+CTC  G +
Sbjct: 356 IHAGHKCTCPEGFY 369


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 289 GGPANGRIRTAGRP 330
           GGP N  +R+ G P
Sbjct: 82  GGPVNDDVRSPGTP 95


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 276 HGSPGRTCQWSNTHC 320
           +G  G+TC   ++HC
Sbjct: 134 NGWKGKTCSLKDSHC 148


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 289 GGPANGRIRTAGRP 330
           GGP N  +R+ G P
Sbjct: 238 GGPVNDDVRSPGTP 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,657
Number of Sequences: 336
Number of extensions: 3860
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)