Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30003
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 128 3e-30
04_01_0103 + 1082077-1082167,1083037-1085477 127 1e-29
01_06_0662 + 30987187-30987277,30987825-30990214 124 9e-29
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 104 8e-23
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 100 9e-22
03_05_0511 + 25056018-25059107 75 4e-14
02_04_0148 - 20198407-20201424 64 1e-10
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 36 0.023
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 31 0.66
06_01_0673 - 4908496-4908563,4908646-4908712,4908821-4908922,490... 31 1.1
04_01_0330 - 4369326-4370852 30 2.0
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 6.1
08_02_0122 + 12805419-12805438,12805842-12805989,12806155-128063... 28 6.1
06_01_0072 + 596333-597442 28 6.1
10_01_0104 + 1271635-1271878,1272542-1273134 28 8.1
09_06_0142 - 21107878-21109104 28 8.1
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 128 bits (310), Expect = 3e-30
Identities = 58/96 (60%), Positives = 73/96 (76%)
Frame = -2
Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
+EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T G
Sbjct: 732 VEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSG 791
Query: 331 QAFPQCVFDHWQVLPGDPCEPQSKP*TLYRKRERGK 224
QAFPQCVFDHW ++ DP E S+ TL + + K
Sbjct: 792 QAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRK 827
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = -3
Query: 690 AKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 511
+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL
Sbjct: 672 SKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL 731
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 281 PVRTSEQALNVVQETRKRKGLKE 213
P+ QA +VQ+ RKRKGLKE
Sbjct: 809 PLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 127 bits (306), Expect = 1e-29
Identities = 55/84 (65%), Positives = 68/84 (80%)
Frame = -2
Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
+EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ LR+ T G
Sbjct: 732 VEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSG 791
Query: 331 QAFPQCVFDHWQVLPGDPCEPQSK 260
QAFPQCVFDHW ++ DP E S+
Sbjct: 792 QAFPQCVFDHWDMMTSDPLEVSSQ 815
Score = 95.9 bits (228), Expect = 3e-20
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = -3
Query: 690 AKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 511
+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL+EPVYL
Sbjct: 672 SKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL 731
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 281 PVRTSEQALNVVQETRKRKGLKE 213
P+ S QA +V + RKRKGLKE
Sbjct: 809 PLEVSSQANQLVLDIRKRKGLKE 831
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 124 bits (298), Expect = 9e-29
Identities = 58/96 (60%), Positives = 72/96 (75%)
Frame = -2
Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
+EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+ LR+ T G
Sbjct: 730 VEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTSTLRAATSG 789
Query: 331 QAFPQCVFDHWQVLPGDPCEPQSKP*TLYRKRERGK 224
QAFP VFDHW++L DP EP ++ TL RG+
Sbjct: 790 QAFPLFVFDHWEMLSVDPLEPGTRQLTLSWISARGR 825
Score = 91.5 bits (217), Expect = 6e-19
Identities = 42/62 (67%), Positives = 51/62 (82%), Gaps = 2/62 (3%)
Frame = -3
Query: 690 AKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 517
+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +YA LTA+PRL+EPV
Sbjct: 668 SKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKPRLLEPV 727
Query: 516 YL 511
YL
Sbjct: 728 YL 729
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 104 bits (249), Expect = 8e-23
Identities = 51/100 (51%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Frame = -2
Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
++IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT LR+ T G
Sbjct: 742 VDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKLRAETSG 801
Query: 331 QAFPQCVFDHWQVLPGDPCEPQS---KP*TLYRKRERGKD 221
QAFPQC+F HWQ + DP + S K T RKR+ KD
Sbjct: 802 QAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
Score = 95.5 bits (227), Expect = 4e-20
Identities = 41/59 (69%), Positives = 50/59 (84%)
Frame = -3
Query: 690 AKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA PRLMEP+Y
Sbjct: 682 SKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASPRLMEPMY 740
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 100 bits (240), Expect = 9e-22
Identities = 46/80 (57%), Positives = 57/80 (71%)
Frame = -2
Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
+EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR +T G
Sbjct: 858 IEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLRYHTQG 917
Query: 331 QAFPQCVFDHWQVLPGDPCE 272
QAF VFDHW ++PGDP +
Sbjct: 918 QAFCLSVFDHWAIVPGDPLD 937
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = -3
Query: 690 AKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
A+EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+ L A PRLMEPVY
Sbjct: 798 AREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLMEPVY 856
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/77 (45%), Positives = 45/77 (58%)
Frame = -2
Query: 508 EIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 329
E+ P +G Y VL+R+R V +E GT +F V AYLPV ES GF+ +LRS T G
Sbjct: 896 ELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGFSNELRSVTAGA 955
Query: 328 AFPQCVFDHWQVLPGDP 278
A V HW+ +P DP
Sbjct: 956 ASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/77 (40%), Positives = 40/77 (51%)
Frame = -2
Query: 508 EIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 329
E+ P +G +Y VL R V +E GT +F V AYL V ES F+ LR+ T G
Sbjct: 872 ELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEFSKKLRNATAGA 931
Query: 328 AFPQCVFDHWQVLPGDP 278
A F HW+ +P DP
Sbjct: 932 ASALLAFSHWETVPQDP 948
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 594 GQIIPTTRRCLYACLLTAQPRLMEPVY 514
GQII R A +L ++PRL+EP+Y
Sbjct: 843 GQIITAVREACQAAILESKPRLVEPMY 869
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = -2
Query: 517 ISLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 338
+ +E++ P G + G +N+R+G + Q +V ++P+N FG++ LRS T
Sbjct: 678 MKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALRSMT 735
Query: 337 GGQ 329
G+
Sbjct: 736 QGK 738
>11_01_0513 -
3977031-3977328,3977425-3977469,3977553-3977629,
3977734-3977850,3978012-3978188,3978282-3978379,
3978478-3978544,3978651-3978741,3978847-3978939,
3979049-3979380,3979938-3980189
Length = 548
Score = 31.5 bits (68), Expect = 0.66
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 345 PTPADRPSRSAYSTIGRSSL-ETRANLRASPKRCTGNEKEERIE--GRSPRLNSIFGQIV 175
P PA + ++A G+ + E ++R + K +GN E+ E +SP L ++ G I
Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125
Query: 174 NYIVKAN*KNVSI 136
NYI + + I
Sbjct: 126 NYIATKKGRKIKI 138
>06_01_0673 -
4908496-4908563,4908646-4908712,4908821-4908922,
4909006-4909119,4909510-4909683,4909769-4910200,
4910855-4911295
Length = 465
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -3
Query: 372 RSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRA---SPKRCTGNEKEERIEGRSPR 202
+S+LLP A P R GR+S+ RA+ A +P+R T K I G
Sbjct: 2 QSLLLPTFAAASAAPPRRGRVPPAGRASVSVRASASAAAVAPRRETDPRKRVVITGMG-- 59
Query: 201 LNSIFGQIVN 172
L S+FG V+
Sbjct: 60 LVSVFGNDVD 69
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 578 VGMIWPPPLWMASVWSVTS 634
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 375 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASP 256
S S +P +P P D PS+ +T G S+ +N SP
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSP 58
>08_02_0122 +
12805419-12805438,12805842-12805989,12806155-12806380,
12806501-12807117
Length = 336
Score = 28.3 bits (60), Expect = 6.1
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -2
Query: 529 HGACISLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA-YLPVNESFGFTAD 353
H ISL+ E VGG Y R ES + TP+ + +A + P ++ G+T
Sbjct: 180 HELTISLQT-IEEFRVGGAYRE-TRNMTRNERESSSSSTPVQMYEAGWAPAGDAPGWTQA 237
Query: 352 LRSNTGGQAFPQCVFDHWQ 296
LR + G + D W+
Sbjct: 238 LRHSIGVLTWASASEDRWR 256
>06_01_0072 + 596333-597442
Length = 369
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 478 HPQLLQDTEFPKIYRLHETG 537
HP LQDT FP + LH +G
Sbjct: 185 HPGYLQDTAFPSLEELHISG 204
>10_01_0104 + 1271635-1271878,1272542-1273134
Length = 278
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 517 ISLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA-YLPVNESFGFTADLRSN 341
+++ +Q E + G+ + R E + T + + KA + P ++ G+T R +
Sbjct: 102 LTIPLQTIEESHVGVSYMDTRNMARNKREGSTSSTLVQMYKADWEPTGDAHGWTQAPRHS 161
Query: 340 TGGQAFPQCVFDHWQV 293
TGG + WQV
Sbjct: 162 TGGSTWQNASESRWQV 177
>09_06_0142 - 21107878-21109104
Length = 408
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 RLGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 373
++ L L++ E LP++ A REG++ AGV +GS R
Sbjct: 170 KVDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,147,532
Number of Sequences: 37544
Number of extensions: 437436
Number of successful extensions: 1137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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