Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30003
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   157   1e-38
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   5e-21
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  98   5e-21
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 73   2e-13
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.17 
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.51 
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   6.2  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  157 bits (380), Expect = 1e-38
 Identities = 73/86 (84%), Positives = 75/86 (87%)
 Frame = -2

Query: 514 SLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTG 335
           S+EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TG
Sbjct: 721 SVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTG 780

Query: 334 GQAFPQCVFDHWQVLPGDPCEPQSKP 257
           GQAFPQCVFDHWQVLPGD  +  S P
Sbjct: 781 GQAFPQCVFDHWQVLPGDVHDLASMP 806



 Score =  103 bits (247), Expect = 1e-22
 Identities = 45/58 (77%), Positives = 52/58 (89%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
           KEG + +EN+RGVRFNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY
Sbjct: 663 KEGPLCDENVRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVY 720



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -1

Query: 251 VVQETRKRKGLKEGLP 204
           VV  TRKRKGLKEG+P
Sbjct: 809 VVANTRKRKGLKEGIP 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 40/80 (50%), Positives = 58/80 (72%)
 Frame = -2

Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
           +E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T G
Sbjct: 702 VEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 761

Query: 331 QAFPQCVFDHWQVLPGDPCE 272
           QAF   VF HWQ++PGDP +
Sbjct: 762 QAFCLSVFHHWQIVPGDPLD 781



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 30/58 (51%), Positives = 39/58 (67%)
 Frame = -3

Query: 687 KEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVY 514
           +EG + +E +R V+F I D  +  + IHRGGGQIIPT RR  Y+  L A PRLMEP +
Sbjct: 643 REGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYF 700


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 40/80 (50%), Positives = 58/80 (72%)
 Frame = -2

Query: 511 LEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 332
           +E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T G
Sbjct: 12  VEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG 71

Query: 331 QAFPQCVFDHWQVLPGDPCE 272
           QAF   VF HWQ++PGDP +
Sbjct: 72  QAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 34/82 (41%), Positives = 47/82 (57%)
 Frame = -2

Query: 523 ACISLEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 344
           A  +  IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFGF+ ++R 
Sbjct: 414 AMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRK 473

Query: 343 NTGGQAFPQCVFDHWQVLPGDP 278
            T G A PQ +F HW+ +  DP
Sbjct: 474 RTSGLANPQLMFSHWEAIDLDP 495


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = -3

Query: 384 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPK 253
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP+
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPR 194


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 481 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 329
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 645 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 511
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 300 QWSNTHCGKACPPVLE--RKSAVKPNDSL 380
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 438  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 286
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 542 AVSRHAYKHLLVVGMIWPPPLWMA 613
           A+ +H   HL  +  +WP   WMA
Sbjct: 13  ALRKHQCSHLFTIKRVWPVTRWMA 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,928,824
Number of Sequences: 59808
Number of extensions: 498625
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)