Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    52   1e-07
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   6.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   6.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.2  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.2  

>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = -3

Query: 504 KYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTY 325
           K +  +     GL++NER++N+P  +  P++  L  E++ A  +N  YNF + + +S+TY
Sbjct: 171 KLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINENEPYNFTHYLLLSRTY 230

Query: 324 TTGES 310
           T  ES
Sbjct: 231 TEIES 235


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 208 DYEGGALTPCRKILLFEGIKFGYLIDLMKAEVES 107
           DYEGG L  C  I   + ++   ++ + KA V S
Sbjct: 261 DYEGGTLMQCTMIPKIKYLEANLILAIQKAAVVS 294


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
 Frame = -3

Query: 549 KTISGECRSQTQRIIKYILADDSQH---TGLVINERIL--NIPAAISVPLFASLQTELEK 385
           K +     S+++RI++  L+D   +     L  N R+L  +I +   + L  ++  EL+K
Sbjct: 595 KDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLL-NIVVELKK 653

Query: 384 AHRKNMLYNFKYLIWISKTYTTGESSEVL 298
           A     L++     W+ K  + G   EVL
Sbjct: 654 ASNHPYLFDGVEESWMQKINSQGRRDEVL 682


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 588 IFSLSNIHYCSYSKNSITTHRPH 656
           IF +S++ +C YS+  +T +  H
Sbjct: 463 IFEVSDVAFCDYSRERMTRNERH 485


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 555 AYKTISGECRSQTQRIIKYILAD 487
           +Y  +  +C +Q QR+IK +LAD
Sbjct: 172 SYCGLLKKCHNQAQRLIKLLLAD 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,214
Number of Sequences: 5004
Number of extensions: 58589
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)