Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)                 29   2.9  
SB_21321| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 46/87 (52%)
 Frame = -3

Query: 582 QCGHRSEKLAYKTISGECRSQTQRIIKYILADDSQHTGLVINERILNIPAAISVPLFASL 403
           QC  + + L  +      + +     + IL++ S   GL+I+ER +NIP  I+ PL+ +L
Sbjct: 542 QCVKQIKDLLLEKCKACSKPEALSSFQNILSNKS--VGLLISERFINIPPQIAPPLYRTL 599

Query: 402 QTELEKAHRKNMLYNFKYLIWISKTYT 322
             EL++ ++K   ++F Y +  S   T
Sbjct: 600 GNELKEQNKKQSTFSFSYPVAASDEET 626


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 322  YWRVIRSAFCKS-RREVFSKRSNCSFDVDVTDQADLSQWDYEGGALTPCRK 173
            YW   R+   K  RREV S       ++DVTD   L +    G    PC++
Sbjct: 1219 YWIDSRARVLKRVRREVGSDEQTIQAEIDVTDLVALDRSQISGTVPHPCKQ 1269


>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
          Length = 1502

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 534  LLR*FCKPISLICGHTGVIFSLSNIHYCSYSKNSITTHRPHHRSSLLGPSSKQLASTNTW 713
            L R FC   SL+     V  +LS I + S S++  +T    HR+ +   + K+L + NT 
Sbjct: 1251 LRRTFCTFASLMSAQVTVDQNLSPIPHSSSSRSGESTTAYPHRAEIGVKTVKRLITNNTG 1310

Query: 714  P 716
            P
Sbjct: 1311 P 1311


>SB_21321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 298 FCKSRREV--FSKRSNCSFDVDVTDQADLSQWDYEGGAL 188
           FC++   V  F K+ NC+   D T    +S++DY+  AL
Sbjct: 14  FCQTAHRVIRFQKKKNCAPCEDRTHDLQISRFDYQTDAL 52


>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 580 VWPQIREIGLQNYLRRMQIPDP 515
           V P +R + +  YLRR+QIP+P
Sbjct: 348 VQPAVRSLQVPCYLRRLQIPNP 369


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 558 ISLICGHTGVIFSLSNIHYCSYSK-NSITTHRPHHRSSLLGP 680
           I+++ GHT   F   +  +CS+ K + + T R + R  ++GP
Sbjct: 50  ITMVVGHTDKSFWDESDDWCSFCKEDRLETERRNERLKIVGP 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,557,633
Number of Sequences: 59808
Number of extensions: 412572
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)