Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30001
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.95 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 661 GHPSLDHHPNNWL 699
           G+P  D +PNNWL
Sbjct: 160 GNPIKDKYPNNWL 172


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 422 YHYLHHYRLNLRKLIGKI 369
           YH L HYR  L++ I  I
Sbjct: 137 YHPLRHYRSGLKRAIRSI 154


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -3

Query: 372 NMLYNFKY---LIWISKTYTTGESSEVLFANQEEKSLVS 265
           N +Y  ++   LIW    Y + E S  +  N  +  LVS
Sbjct: 85  NQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVLVS 123


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 507 IKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWIS 334
           IKY    +++   L I   +  I AAI  P+   L    ++   + + YN  ++I+ S
Sbjct: 292 IKYAKHKNNRRVWLTIL-LVWAISAAIGSPIVLGLNNTPDRTPDQCLFYNTDFIIYSS 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 487 ISQNIFNYSLGLGSAFS*DSF 549
           ++Q  F+Y+LGLG+  +  S+
Sbjct: 284 VTQIFFSYALGLGALVALGSY 304


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 487 ISQNIFNYSLGLGSAFS*DSF 549
           ++Q  F+Y+LGLG+  +  S+
Sbjct: 337 VTQIFFSYALGLGALVALGSY 357


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 610 TTVVTPKTPSLPIG 651
           T   TP  PS+P+G
Sbjct: 47  TAAATPTPPSVPVG 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,667
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)