Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11055
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.5  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    22   6.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   6.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +1

Query: 445 RKNCYHNFYVIPCRSHSPQIMFIRHENDFSNLFLV 549
           +KN Y++FY+    +    + F+  E +    F++
Sbjct: 176 KKNLYYSFYISDKAARPRSLQFVDSEGNILEEFVL 210


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +1

Query: 172 CNQLGHRSDRNHSRRYHLLSLRHSP*AQMMQSGRAKSDIL 291
           C    + +   HS + HL    H+P   + + G    DI+
Sbjct: 289 CRDCSYATKYCHSLKIHLRRYGHTPNVVLDEEGNPCPDII 328


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 548 LNKVLYNDSIIYCFIKC 598
           ++K+L ND ++  +IKC
Sbjct: 32  VDKILNNDRVLTNYIKC 48


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 349 FFKGAFSNVLRGTGGAFVLVLYDEI 423
           F    ++  L  TGG  V+ L DEI
Sbjct: 507 FRPNTYNRFLAATGGDHVISLIDEI 531


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 70  FRCVRARYHHLPC 108
           + C   R HH+PC
Sbjct: 935 YMCEGERKHHMPC 947


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,311
Number of Sequences: 336
Number of extensions: 2941
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)