Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11055
(745 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 41 0.001
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.005
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.011
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.035
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.061
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.080
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 34 0.11
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.24
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 32 0.56
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 31 0.75
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.99
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 31 0.99
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.7
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.0
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 29 3.0
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8) 29 5.3
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 5.3
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 7.0
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 7.0
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.0
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 28 9.2
SB_6969| Best HMM Match : Astacin (HMM E-Value=0) 28 9.2
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
F+G+ + K SDGL+GLYRGF +S GII+YR YFG YDT + +L ++ +VIS
Sbjct: 156 FNGMIDVYKKTIASDGLVGLYRGFVISCVGIIVYRGFYFGLYDTLKPILLG-EDAGVVIS 214
Query: 182 WAIAQTVTTVAGIISYPFDTVRRR 253
+ + VT AG+ SYP DT+RRR
Sbjct: 215 FVLGYGVTVSAGLASYPIDTIRRR 238
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +1
Query: 256 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 432
MM SG A + YK +I C I K EG + KGA +N+LRG GA VL +D+ K++
Sbjct: 240 MMTSGEA---VKYKGSIDCTIQILKKEGAMSLMKGAGANILRGMAGAGVLAGFDKFKEL 295
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 253 QMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 381
+M+++GR D YK I C + ++EG +F++G +N +R
Sbjct: 42 EMLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNT 166
+ G+ +C S+ ++S+G + +RG + +A F F D + + PK T
Sbjct: 53 YKGVIDCTSRTYRSEGFLSFWRGNLANCIRYFPTQALNFAFKDQVKALF-KPKKT 106
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDT-ARGMLP 151
+SG+G ++KI++ +GL G ++G G ++ I+ Y A F Y+ +G+ P
Sbjct: 591 YSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIAP 641
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFY---DTARGMLPDPKNTPI 172
+ G+ + + I + +G++ LY+G S G+ + F Y D +P TPI
Sbjct: 192 YKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFLAYQILDKVDSTRTEPSATPI 251
Query: 173 VISWAIAQTVTTVAGIISYPFDTVRRR 253
+ + A +S+PFDT+R++
Sbjct: 252 CM-FVNGCVAGAFAHTLSHPFDTIRKK 277
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVISWA 187
GL + ++K +G+ ++G GVS + Y A + ++ L DP N + S +
Sbjct: 96 GLIRTFASVYKREGIKAFWKGNGVSCIRLFPYSAVQYAAFNRIVASLEDPHNGELSDSGS 155
Query: 188 -IAQTVTTVAGIIS-YPFDTVRRR 253
+A T +T+ +++ YP + ++ R
Sbjct: 156 MLAGTSSTLIAMVTVYPCEVIKTR 179
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 277 KSDILYKNTIHCWATIAKTEGTSAFFKG---AFSNVLRGTGGAFV 402
KS+ YK H TI + EG A +KG +F + GG+F+
Sbjct: 187 KSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFL 231
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 259 MQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 381
MQ ++D YK+T+H +++I K EG +KG + N+L+
Sbjct: 189 MQMKGIRADFAYKSTLHAFSSIVKLEGFRGLYKGMWPNILK 229
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKN------ 163
++G +C+ K+F S+GL G +RG ++ I A YFG + +L PK
Sbjct: 297 YTGSLDCLKKVFHSEGLRGCFRGMAITTTRDIPAFALYFGSFQYVCELL-TPKGEHVDNL 355
Query: 164 TPIVISWAIAQTVTTVAGIISYPFDTVR 247
+PI + ++ T++ I++YP D V+
Sbjct: 356 SPIRLFFS-GGIAGTLSWILTYPVDMVK 382
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
++G+ +C +I K + ++GLY+G + G+ + A FG L IS
Sbjct: 191 YNGVFDCFKQIIKRESVLGLYKGMASPLAGLGLINAIIFGVQGETLRRLNGSGTMAQAIS 250
Query: 182 WAIAQTVTTV 211
AIA V ++
Sbjct: 251 GAIAGGVQSI 260
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGII-IYRASYFGFYDTARGMLPDPKNTP 169
F+G +C K +++G GLY+G + G+ I+ ++GF + + DP P
Sbjct: 68 FTGTFDCAMKTIRNEGFFGLYKGMAAPITGVTPIFAICFWGFNMGKKLQMKDPNADP 124
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 37.1 bits (82), Expect = 0.015
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGM-LPDPKNTP--- 169
+ GL + S I++ +G+ YRG S+ GII Y Y+T + L KN
Sbjct: 266 YRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLAVYETLKNFYLNYHKNQSADP 325
Query: 170 -IVISWAIAQTVTTVAGIISYPFDTVRRR 253
+++ A +T + SYP VR R
Sbjct: 326 GVLVLLACGTASSTCGQLASYPLSLVRTR 354
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 35.9 bits (79), Expect = 0.035
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML 148
FSG+ + K++G+ L++G G ++ G+ RA YF Y + ML
Sbjct: 774 FSGIVPYARYMVKNEGIQSLFKGLGTTLLGVTPSRAIYFAIYSKLKDML 822
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 35.1 bits (77), Expect = 0.061
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLP-----DPKNT 166
+ G+ +C + +FK +G+ YR + + I ++ +F Y+ AR L DPK
Sbjct: 32 YRGVIHCATSVFKEEGIRAFYRSYTTQLSMNIPFQTLHFTVYEYARKALNPLGGYDPKTH 91
Query: 167 PI--VISWAIAQTVTTVAGIISYPFDTVRR 250
I + A+A +TT + +T R
Sbjct: 92 VIAGATAGAVASAITTPLDVAKTLLNTQER 121
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 34.7 bits (76), Expect = 0.080
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
+ G +C+ K+++S GL G ++G V+ I A YFG Y+ + + V +
Sbjct: 75 YRGPVDCLVKLYRSRGLAGCFQGNTVTAVRDIPGFAVYFGVYELLCDWFSNLFGSRGVAT 134
Query: 182 WAIAQTVTTVAGIIS-YPFDTVRRR 253
+ +A V S +PFD ++ R
Sbjct: 135 YLMAGGFAGVVSWASTFPFDVIKSR 159
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTAR 139
++GL N ++I++ +G+ YRG+ ++ GI+ Y F Y+T +
Sbjct: 25 YTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCK 70
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 250 AQMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLV-LYDEIK 426
A + Q R D Y+ + T+ KTEG +KG + R A + + LYD++K
Sbjct: 52 ASIAQGVRTTHDAHYRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVK 111
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGML--PDPKNTPIV 175
+ G+ + +FK++G+ +Y+G + + + + G YD + M D +N I+
Sbjct: 66 YRGMLGTMVTLFKTEGMKTMYKGLIPGIHRQLCFASIRIGLYDQVKAMYGDTDVQNPKIL 125
Query: 176 ISWAIAQTVTTVAGIISYPFDTVRRR 253
A + T +A ++ P + V+ R
Sbjct: 126 KKIAASITTGIMAVSVAQPTEVVKIR 151
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 31.9 bits (69), Expect = 0.56
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFG 76
+ GLG+C+ +++++ GL G+++G G
Sbjct: 200 YQGLGDCLLQVYRTGGLRGVFKGLG 224
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 31.5 bits (68), Expect = 0.75
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 17 NCISKIFKSDGLIGLYRGFGVSVQGIIIY 103
+C I++ +G+ G YRGFG + ++Y
Sbjct: 332 DCFRTIYQQEGIFGFYRGFGALLIQCVVY 360
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 31.1 bits (67), Expect = 0.99
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 154
+ G +C+ K K G++GLYRG + G + + F ++ + + D
Sbjct: 79 YRGPIDCVKKTVKGHGVLGLYRGLSSLLYGSVPKASVRFAVFEYLKNKMAD 129
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 17 NCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPD 154
+C K+ +++G IGLYRG + G+ +A D RG+ D
Sbjct: 959 DCFFKVVRNEGPIGLYRGLLPQLLGVSPEKAIKLTTNDFVRGIFSD 1004
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 259 MQSGRA--KSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 378
MQ+ RA +++ +YKN+I C+ + + EG ++G +L
Sbjct: 941 MQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDG-LIGLYRGFG------VSVQGIIIYR-ASYFGFYDTARGMLP-- 151
+ G+ + +IF ++G ++ LYRGF + GI Y S+ F+ +G+L
Sbjct: 36 YCGICQTVKQIFMTEGGMVALYRGFTPTSLSMIPAVGIGFYAFESFKDFFVAMKGVLTRI 95
Query: 152 DPKNTPIVISWAIAQTVTTVAGIIS----YPFDTVRRR 253
P+ V++ +AG S YP D VRRR
Sbjct: 96 HPETGETVLTAPGGLLCGALAGATSQTLAYPLDVVRRR 133
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 17 NCISKIFKSDGLI-GLYRGFGVSVQGIIIYRASYFGFYDTARGML 148
N + ++K DG+ GLYRG ++ + A FG Y+ + L
Sbjct: 217 NTLVNVYKDDGIRRGLYRGLSINYLRVCPQVAIMFGVYEVTKQFL 261
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 271 RAKSDILYKNTIHCWATIAKTEGTSAFFKGAF 366
R + Y+N H TIAK EG A KG F
Sbjct: 41 RGTYSVYYRNVFHASYTIAKYEGILAMQKGLF 72
>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
Length = 571
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 256 SAPTDCVEGIGDDTGDCGYGLSDGPADYNGCVLRVGQH 143
SAP D E + +CGY + P D N L+V H
Sbjct: 255 SAPPDFQEVVFSLPSECGYSPGEKPMDLNELQLKVAIH 292
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 99 MMIPCTDTPKPLYRPIRPSDLKILLMQ 19
+++PC P LYR +RP L+I + Q
Sbjct: 587 IILPCPSDPCSLYRELRPQALQIQMSQ 613
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 419 SSYKTSTKAPPVPLRTLEKAP--LKKAEVPSVLAMVAQQWMVFLYRIS 282
S Y TST+ VPL T E P L+ A+ P+ QW V ++
Sbjct: 249 SPYHTSTRMLTVPLITPESKPWILRFADEPADTTFAHTQWAVLTCHVA 296
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 286 ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRG-TGGAFVLVLYDEIKKVL 435
I Y+N H TIA+T G ++G + ++R F Y+ K +L
Sbjct: 242 IQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGFFFGFYEFTKNLL 292
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
++G+ + + +I +G+ GLY+G S+ I + YD + D +
Sbjct: 69 YTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQSVYDIMKLRALDSAFAANSGT 128
Query: 182 WAIAQTVT-TVAGIISYPFDTVRRR 253
+ + + +A + +P D VRR+
Sbjct: 129 FLVCGAIAGMIAQTVVHPLDVVRRQ 153
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = -1
Query: 301 CSCTGYRSWHDQ----TASSAPTDCVEGIGDDTGDC-GYGLSDGPADYN 170
C CTGYR D A ++P D +E + TG+C ++ P YN
Sbjct: 302 CRCTGYRPILDAMKSFAADASPID-IEELNKCTGNCSNCPCTESPVPYN 349
>SB_6969| Best HMM Match : Astacin (HMM E-Value=0)
Length = 225
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 GLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASY-FGFY 127
G C S + + G+ + GFG QG++++ + GFY
Sbjct: 88 GFSKCWSYVGRIGGMQKISIGFGCFTQGVVVHEIGHALGFY 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,543
Number of Sequences: 59808
Number of extensions: 356609
Number of successful extensions: 922
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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