Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11055
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   162   4e-42
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (393), Expect = 4e-42
 Identities = 71/84 (84%), Positives = 79/84 (94%)
 Frame = +2

Query: 2   FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
           F+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +IS
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 182 WAIAQTVTTVAGIISYPFDTVRRR 253
           W IAQ VTTVAGI+SYPFDTVRRR
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRR 239



 Score =  111 bits (266), Expect = 9e-27
 Identities = 50/60 (83%), Positives = 56/60 (93%)
 Frame = +1

Query: 256 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 435
           MMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 292 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 381
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 2   FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 130
           + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (393), Expect = 4e-42
 Identities = 71/84 (84%), Positives = 79/84 (94%)
 Frame = +2

Query: 2   FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTARGMLPDPKNTPIVIS 181
           F+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTARGMLPDPK TP +IS
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 182 WAIAQTVTTVAGIISYPFDTVRRR 253
           W IAQ VTTVAGI+SYPFDTVRRR
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRR 239



 Score =  111 bits (266), Expect = 9e-27
 Identities = 50/60 (83%), Positives = 56/60 (93%)
 Frame = +1

Query: 256 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 435
           MMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 241 MMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 29.5 bits (63), Expect = 0.035
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 292 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 381
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 2   FSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 130
           + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 425 LISSYKTSTKAPPVPLRTLEKAPL 354
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,374
Number of Sequences: 438
Number of extensions: 3464
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)