Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11054
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.8  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 83  APPGDDNDLAYRIRGHMNKLAPRTTTWHSENRTFYVPK-DLNTTSHV 220
           +P G ++ +++ + GH + L+P   T +  + + Y P   L+ + H+
Sbjct: 39  SPQGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHL 85


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 475 PDYYRP*LSVSGGST 519
           P+Y +P L VS GST
Sbjct: 186 PNYIKPQLHVSTGST 200


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 79  RSTPRRRQRPGISNTRTYEQTCPSNDYMAQRKPNLLR 189
           R  P  R     S+    +  CPS + M   +  LLR
Sbjct: 77  RDLPNSRCNSRESSDSLVQPRCPSGESMLSERAALLR 113


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 233 GPLRKSLDHHTLAP 274
           GPLR S  HH  +P
Sbjct: 35  GPLRTSYQHHFNSP 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,311
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)