Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11054
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.60
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 28 1.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 2.4
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 5.6
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 7.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 9.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.7
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 9.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.7
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 295 SKSFDIEVNGKQLTVTIDRLKPAYITRDDGK 387
S+S+D+E+NGK L + D L Y+T ++ K
Sbjct: 403 SESYDVEMNGKSLEDS-DSLSELYLTNEEKK 432
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 1.0
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = +1
Query: 313 EVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVSFPDYYRP 492
+ + Q T++ KP+ + +G ED Q TS EEH KT+ + F D
Sbjct: 149 QASSAQATLSFVASKPS---QPEGNLEDIQ-TSSQEEEHDNEKDKTKESKAKGFLD---- 200
Query: 493 *LSVSGGSTVASSCHGY 543
+SG S ASS H Y
Sbjct: 201 --DLSGLS--ASSLHNY 213
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 267 WPLQSLK-KRIEIVRH*GKWQTINCHHRSPK 356
W +Q + ++++ + H G+W T+ HH++PK
Sbjct: 462 WIIQGCRDQKLDELYH-GEWNTVPGHHKNPK 491
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 345 YGDS*LFAI---YLNVERFRSSS*DFVGANVWWSSDFRRGPCLKNTWDVVFKSL 193
+G+ L AI Y+ S F+G W S +G LK+TW+ V ++
Sbjct: 196 FGNEMLHAIGSTYVQRANILIQSQSFLGIRGVWGSLCAKGTLLKDTWNTVVSAV 249
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 375 RRWQERRQTEDQRGERRTSASSTKDEKRPYSQLP 476
R+ + RR + DQRG +R S+ T E P++ +P
Sbjct: 60 RKGKGRRSSLDQRG-KRASSIGTGFEALPHADVP 92
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 349 RLKPAY---ITRDDGKREDKQKTSEASEEHQRPVQKTRSGR 462
R KP Y R R + + E SEE RP+ + R+ R
Sbjct: 113 RSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSR 153
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 523 PQYSPPRPIATVDSSP 476
P SPPRPIA V +P
Sbjct: 267 PPNSPPRPIAPVSMNP 282
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 520 VASSCHGYLSADLRARIR*CVRAPIRS-QRAVALSQVTPG 636
+AS H Y+ ADL A +R A +R+ +R ++L + T G
Sbjct: 475 LASRTHAYVGADLAAVVR---EAALRAIKRTISLQKDTSG 511
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 547 SGSRGRMMPQYSPPRPIATVDSSPGS 470
SG R P PP P++ + SSP S
Sbjct: 959 SGPRPAAPPSIPPPLPVSNILSSPTS 984
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 134 NKLAPRTTTWHSENRTFYVPKDLNTTSHVFLRQGPLRKSL 253
+K AP+T+ + N T K+L+ + + Q P+RKS+
Sbjct: 182 SKNAPKTSPKDASNETADQEKELSLHTSIDEIQNPVRKSV 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,109
Number of Sequences: 5004
Number of extensions: 60190
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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