Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11054
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206... 35 0.050
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 31 0.82
10_08_0418 - 17779499-17780952,17781177-17782017 29 2.5
05_04_0102 + 18013994-18014049,18014236-18014335,18014499-180147... 29 2.5
05_03_0216 + 10370531-10371922,10378656-10378808 29 2.5
02_01_0085 + 610872-611297 29 4.4
08_02_0037 + 11480213-11481013,11483612-11483707 28 5.8
04_04_0394 + 24905501-24905673,24907824-24907868,24908412-249085... 28 5.8
05_07_0125 + 27861368-27862282 28 7.6
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571 28 7.6
02_05_1082 - 33976038-33978035 28 7.6
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 28 7.6
01_01_1216 - 9827190-9827531 28 7.6
>01_06_1572 +
38319544-38319849,38320427-38320513,38320584-38320676,
38321491-38321567,38321974-38322562,38322701-38322794,
38322884-38322996,38323438-38323524,38323842-38323964,
38324058-38324192,38324437-38324484,38324993-38325094,
38325321-38325716
Length = 749
Score = 35.1 bits (77), Expect = 0.050
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +1
Query: 130 YEQTCPSNDYMAQRKPNLLRA*GLKHDIPCVLEARTPPKVARPPYIGP---YKVLRRGSK 300
Y Q N+ +RK L A L+ P V+++ +VA+PP P Y V +GSK
Sbjct: 614 YNQQKVRNEERMKRK-RLAAAAKLQDGYPVVMQSALIQQVAQPPITNPVATYPVTDQGSK 672
Query: 301 SFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSEA 417
SFD ++++ + + P I R+ G+ + K++ E+
Sbjct: 673 SFD---RVREISASAN---PDDINRNTGEMKKKKRKPES 705
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 475 PDYYRP*LSVSGGSTVASSCHGYLSADLRARIR*CVRAPIRSQRAVALSQVTPGCCAGSP 654
PD YRP LS +G ST A S G + A ++S+RA + +P A +P
Sbjct: 146 PDVYRPSLSAAGRSTSARSVSGSSRTQPFPK---PTLARVKSERATTAAAASPRPPALAP 202
Query: 655 PQS 663
P S
Sbjct: 203 PAS 205
>10_08_0418 - 17779499-17780952,17781177-17782017
Length = 764
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 5 DIQASAAELVYGEPLRLPGQFFNTSAAPPGDDNDLAYRIRGHMNKLAPR 151
D++A E++ G P RLP +F PPG+ + Y+ R NK R
Sbjct: 586 DMEARKFEVIQGPPCRLP-RFNFGPIGPPGERDPKKYQKRVVRNKYRKR 633
>05_04_0102 +
18013994-18014049,18014236-18014335,18014499-18014783,
18014854-18015023,18015382-18015510,18016109-18016205,
18016318-18016395,18016474-18016635,18016673-18016771
Length = 391
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 517 TVASSCHGYLSADLRARIR*CVR 585
+VA+SC+GYL ADL+A R R
Sbjct: 68 SVAASCNGYLGADLQALCREAAR 90
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 235 TPPKVARPPYIGPYKVL-RRGSKSFDIE----VNGKQLTVTIDRLKPAYITRDDGKREDK 399
T K+A P ++GPYK++ RRG ++ +E + G + +LK T K
Sbjct: 416 TKGKLA-PRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRTEPQTKPYPL 474
Query: 400 QKTSEASEEHQRPVQKTRSGR 462
S QRP ++ GR
Sbjct: 475 DMWKYGSALQQRPEDRSLYGR 495
>02_01_0085 + 610872-611297
Length = 141
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 490 P*LSVSGGSTVASSCHGYLSADLRARIR*CVRAPIRSQRAVALSQVTPGCCA 645
P S + VAS G +R R+ C + PI + AV ++ TP CA
Sbjct: 11 PSKSELAAAEVASCAWGRSGGRIRHRLASCPQLPITAAPAVTRARSTPDSCA 62
>08_02_0037 + 11480213-11481013,11483612-11483707
Length = 298
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +3
Query: 378 RWQERRQTEDQRG----ERRTSASSTKDEKRPYSQLPGLLSTVAIGL---GGEYCGIILP 536
RW E D++G E++ + ++ S+ P + + L GGE I
Sbjct: 22 RWPEWVPRPDEKGAAAEEKKLPGWKDRRKRTSKSKPPPAILVCGLELRDSGGEKAASIPA 81
Query: 537 RLPECGPARKNQVMRARANQEPTRGR 614
LP PARK + + + EPT R
Sbjct: 82 PLPP--PARKKMLFKMKVKDEPTAAR 105
>04_04_0394 +
24905501-24905673,24907824-24907868,24908412-24908513,
24908700-24908799,24908963-24909247,24909318-24909487,
24909846-24909974,24910332-24910428,24910541-24910618,
24910694-24911017
Length = 500
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 517 TVASSCHGYLSADLRARIR*CVR 585
+VA+SC+GY+ ADL+A R R
Sbjct: 156 SVAASCNGYVGADLQALCREAAR 178
>05_07_0125 + 27861368-27862282
Length = 304
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 425 NISVQYKRREAAVQSASRTTIDRSYRSRGGVLWHHPATAT*VRTCAQESGDACAR 589
N+ VQ++ E AV +A R Y R ++ + P T TC Q ++C R
Sbjct: 111 NVYVQFREEEQAV-AAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNR 164
>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
Length = 527
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 341 VTVNCLPFTSMSNDFDPLLKTL*GPMYGGRATFGGVLAS 225
+ V C+P + N FDP + Y R+T G +L S
Sbjct: 78 LNVGCIPSKEVMNHFDPFYLAVPSIYYELRSTMGALLHS 116
>02_05_1082 - 33976038-33978035
Length = 665
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 435 TLMFFARLAGLLFVFSLAIVSRDIGRF 355
+LM A LAG++FV L V RD+ R+
Sbjct: 304 SLMVIAFLAGIVFVILLRTVRRDLTRY 330
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 27.9 bits (59), Expect = 7.6
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 61 TVLQHIRSTPRRRQRPGISNTRTYEQTCPSNDYMAQRKPNLLRA*GLKHDIPCVLEARTP 240
T+ + +R R++ ++ R E T + DY+ R L R V +T
Sbjct: 323 TIRERLRIAQSRQK--SYADNRQRELTFEAGDYVYLRVTPLRR----------VHRFQTK 370
Query: 241 PKVARPPYIGPYKVL-RRGSKSFDIEV 318
K+A P ++GPYK+L RRG ++ +E+
Sbjct: 371 GKLA-PRFMGPYKILERRGEVAYQLEL 396
>01_01_1216 - 9827190-9827531
Length = 113
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 64 VLQHIRSTPRRRQRPGISNTRTYEQTCPSNDYMAQRKPNLLRA*G-----LKHDIPCVLE 228
+L+ STP R + T TCP + ++++K + +K+ PC+
Sbjct: 12 ILKVTESTPPNRGELAVG-VHTNAGTCPYQEALSKKKKKKKKKKKKKKKHMKNASPCISM 70
Query: 229 ARTPPKVARPPYIGPYKVLRRGSKSFDIEVNG 324
K+A P IG ++ S + + E+NG
Sbjct: 71 DTRIKKLAMRPIIGNVSFRQQNSLAVNQELNG 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,722,080
Number of Sequences: 37544
Number of extensions: 475290
Number of successful extensions: 1622
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -