Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11054
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 29 3.4
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 3.4
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 29 4.5
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 29 4.5
SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 5.9
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 28 5.9
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 7.8
SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0) 28 7.8
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 122 RGHMNKLAPRTTTWHSENRTFYVPKDLNTTSHVFLRQG 235
RG K+ +TTT H E R Y P NTT +R G
Sbjct: 305 RGESKKIIEKTTTTHYETRPAYTPPPKNTTIEETVRYG 342
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 378 RWQERRQTEDQRGERRTSASSTKD-EKRPYSQLP 476
RW ERR ++D+ +R S +K +K+P + P
Sbjct: 138 RWSERRSSKDRESRKREHRSRSKSRDKKPKPESP 171
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +1
Query: 388 REDKQKTSEASEEHQRPVQKTR--SGRTVSFPDYYRP 492
++ ++K++ E++ RP +K+R +G V++P YY+P
Sbjct: 1034 QQAEEKSAYYYEKNSRPEEKSRPVNGLPVTYPTYYQP 1070
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 471 LPGLLSTVAIGLGGEYCGIILPRLPECGPARKNQVMRAR 587
L G +++ +GL G C +LPR C A V R R
Sbjct: 379 LQGKITSPRLGLRGVMCLALLPRTSNCSTADHYDVTRGR 417
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Frame = +1
Query: 331 LTVTIDRLKPAYITRDDGKREDKQKTSEASEEHQRPV-------QKTRSGRTVSFPDYYR 489
LTV + L+ IT+ +++D++ + Q P+ Q +GRT S YR
Sbjct: 334 LTVPVTDLRHLAITKQQARQKDQENFVPLLQRRQAPLLFVRVVSQALETGRTTSPSWDYR 393
Query: 490 P*LSVSGGSTVASSCHGYLS 549
P +S G+ + S + Y++
Sbjct: 394 PDMSPFHGTLTSPSGNVYVA 413
>SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 369 HARRWQERRQTED-QRGERRTSASSTKDEKRPYSQLP--GLLSTVAIGLGGEYCG 524
H + + ++QT+ R +RR +SS ++E+ QLP G +S ++G G E CG
Sbjct: 139 HEKTTEMQKQTKMVPRKKRRVLSSSEEEEEEEEPQLPEMGGVSEASVG-GQETCG 192
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +1
Query: 355 KPAYITRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVSFPDYYRP*LSVSGGSTVASSC 534
+ A+ ++D R +T+E+ EH RP++ G V + P L+ S V
Sbjct: 725 RQAWAAKEDALRTRISRTTESLREHARPLRPLAIGTRVFLQNQQGPNLNKWDRSGVVVEA 784
Query: 535 HGYLSADLRARIR*CVRAPIRSQR 606
G+ R ++ R +R++R
Sbjct: 785 AGH--DQYRVKVDGSGRVTLRNRR 806
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 292 GSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSE 414
G ++FD+ V+ + T+ D +KP +I +DG Q T E
Sbjct: 152 GRRTFDVSVDDTRKTIPKDAVKPKFI--EDGSFVPFQSTDE 190
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 292 GSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSE 414
G ++FD+ V+ + T+ D +KP +I +DG Q T E
Sbjct: 526 GRRTFDVSVDDTRKTIPKDAVKPKFI--EDGSFVPFQSTDE 564
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 367 ITRDDGKREDKQKTSEASEEHQRPVQKTRS 456
+TRDD ++K+ + S EH++ +KT++
Sbjct: 856 LTRDDKATHSRKKSKKKSVEHEKNAEKTQA 885
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 295 SKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVSF 474
+KS D+ + K + + + R P+ IT D K + EAS ++ RP S ++ +
Sbjct: 322 AKSDDM-TDPKSIGIKLQR-NPSPITDDSSKTATYSRLPEASSDNSRPESPAESSKSPTS 379
Query: 475 P 477
P
Sbjct: 380 P 380
>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 134 NKLAPRTTTWHSENRTFYVPKDLNTTSHVFLRQGPLRKSL 253
++LA R T TFY+ DLNT + FL+Q +R S+
Sbjct: 197 HELAKRQMTGFGGMVTFYIKGDLNTATE-FLKQVKIRLSV 235
>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1736
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 285 KKRIEIVRH*GKWQTINCHHRSPKTCLYHARRWQ 386
K R +V H WQ++ H +S ++ + H + WQ
Sbjct: 1033 KSRQSMVVHGKSWQSMVVHGKSWQSMVVHGKSWQ 1066
>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 376 DDGKREDKQKTSEASEEHQRPVQKT 450
D RE + K EASEE+ RP++ T
Sbjct: 967 DYENRERRDKGDEASEENNRPIRST 991
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 214 PCVLEARTPPKVARPPYIGPYKVLRRGSKSFDIEVNGKQLTVTIDRLKP---AYITRDDG 384
PC ++P P P K L G + +E GK+ + K A + D
Sbjct: 1153 PCKAARKSPSADEEPAEEAPSKALS-GEEDEWVEKEGKEKKKKHKKHKKHGSAKHKKKDK 1211
Query: 385 K---REDKQKTSEASEEHQRPVQK 447
K +++KQKTS+ SE + PV +
Sbjct: 1212 KHKKQKEKQKTSDGSESDEAPVPR 1235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,647
Number of Sequences: 59808
Number of extensions: 516221
Number of successful extensions: 1866
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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