Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11054
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 31 0.73
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 31 0.73
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z92803-13|CAB07249.2| 331|Caenorhabditis elegans Hypothetical p... 28 5.1
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL021482-4|CAA16341.2| 331|Caenorhabditis elegans Hypothetical ... 28 5.1
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical pr... 27 9.0
U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical p... 27 9.0
AF078790-3|AAC26933.1| 380|Caenorhabditis elegans Hypothetical ... 27 9.0
AC006681-4|AAK85495.1| 380|Caenorhabditis elegans Hypothetical ... 27 9.0
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 255 TTIHWP---LQSLKKRIEIVRH*--GKWQTINCHHRSPKTCLYHARRW 383
TT++W + K + H GKWQTI HH P C Y + +
Sbjct: 98 TTMYWSNFNMNHAKDNNYVAEHTTDGKWQTIGKHHELPFVCSYDPKNF 145
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 255 TTIHWP---LQSLKKRIEIVRH*--GKWQTINCHHRSPKTCLYHARRW 383
TT++W + K + H GKWQTI HH P C Y + +
Sbjct: 98 TTMYWSNFNMNHAKDNNYVAEHTTDGKWQTIGKHHELPFVCSYDPKNF 145
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 407 PARRAKNISVQYKRREAAVQSASRTTIDRSYRSRGGV 517
P+ R + S R + V+SASR ++ R SRG V
Sbjct: 77 PSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSV 113
>Z92803-13|CAB07249.2| 331|Caenorhabditis elegans Hypothetical
protein K01G5.9 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 357 TCLYHARRWQERRQTE---DQRGERRTSASST 443
+C+Y + W ERRQ E DQ ER S ST
Sbjct: 191 SCVYGSGTWSERRQYEEPFDQVSERTISICST 222
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 126 PRIRYARSLSSPGGAADVLKNCPGKRRGSP*TSSAAD 16
PR YARS PGG V+ PG+ RGS + +AD
Sbjct: 214 PRGSYARSGRGPGGRGRVI--TPGRYRGSGQHNISAD 248
>AL021482-4|CAA16341.2| 331|Caenorhabditis elegans Hypothetical
protein K01G5.9 protein.
Length = 331
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 357 TCLYHARRWQERRQTE---DQRGERRTSASST 443
+C+Y + W ERRQ E DQ ER S ST
Sbjct: 191 SCVYGSGTWSERRQYEEPFDQVSERTISICST 222
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 346 DRLKPAYITRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVS 471
DR K RD+ KRE++Q + H+R R +VS
Sbjct: 220 DRRKDTEELRDERKRENEQNQNRERYHHRRSKSSNRDDASVS 261
>Z71259-4|CAA95788.2| 501|Caenorhabditis elegans Hypothetical
protein F13G3.3 protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 237 PSESRSTTIHWPLQSLKK 290
PS+ +T IHWP ++LKK
Sbjct: 330 PSKINNTWIHWPQKNLKK 347
>U41007-19|AAA82274.1| 432|Caenorhabditis elegans Hypothetical
protein C33H5.17 protein.
Length = 432
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 292 GSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSEASEE 426
G+K+ D+E+ KQL ++LK I R+ G + K SE+ E
Sbjct: 359 GAKNLDLELELKQLKEKQNKLKSG-IQRNRGDKNTVSKMSESLRE 402
>AF078790-3|AAC26933.1| 380|Caenorhabditis elegans Hypothetical
protein F36H12.9 protein.
Length = 380
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 259 PYIGPYKVLRRGSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTS 411
PY+GP + G K D+EV G T + + D R+ K+KTS
Sbjct: 319 PYMGPIEQPGDG-KVIDLEVEGGASTKDFSKRNAKEKDQSDETRKGKKKTS 368
>AC006681-4|AAK85495.1| 380|Caenorhabditis elegans Hypothetical
protein R13H9.6 protein.
Length = 380
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 259 PYIGPYKVLRRGSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQKTS 411
PY+GP + G K D+EV G T + + D R+ K+KTS
Sbjct: 319 PYMGPIEQPGDG-KVIDLEVEGGASTKDFSKRNAKEKDQSDETRKGKKKTS 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,446
Number of Sequences: 27780
Number of extensions: 363508
Number of successful extensions: 1238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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