Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11054
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    24   1.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 208  DIPCVLEARTPPKV 249
            D+PCVL A TP  V
Sbjct: 1103 DLPCVLRASTPAPV 1116


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 499 IATVDSSPGS*LYGRFSSFVLDADVLRSPR 410
           +ATV S   S L+  F  ++  A  +R PR
Sbjct: 14  LATVSSQDYSQLFAGFGPYIRQAVAMRDPR 43


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 333 NCHHRSPKTCLYHARRWQERRQTEDQRGERRTSASSTKDEKR 458
           N      K C  +     + RQ ++   + R+   S KDEKR
Sbjct: 21  NASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKR 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,155
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)