Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11054
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    30   1.6  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    30   1.6  
At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    29   2.8  
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V...    28   6.4  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    28   6.4  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    28   6.4  

>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 164 HSENRTFYVPKDLNTTSHVFLRQGPLRKSLDHHTLAPT 277
           H  N+TF  P DL  T    L QG    S+D H +  T
Sbjct: 332 HGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQT 369


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 164 HSENRTFYVPKDLNTTSHVFLRQGPLRKSLDHHTLAPT 277
           H  N+TF  P DL  T    L QG    S+D H +  T
Sbjct: 332 HGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQT 369


>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 634 PASPAITRPRVGS*LARARIT*FLRAGPHSGSRGRMMPQYSP 509
           P+ PAI+ P V S  A+ARI    R       RG ++P+Y P
Sbjct: 235 PSRPAISTPPVASKSAQARIG---RPPVEGRGRGHLLPRYWP 273


>At5g57320.1 68418.m07160 villin, putative similar to villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 962

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 390 RRQTEDQRGERRTSASSTKDEKRPY 464
           +RQ  + +G  +TS+SS+KDE +PY
Sbjct: 365 QRQGVNVQGLVKTSSSSSKDEPKPY 389


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 211 IPCVLEARTPPKVARPPYIGPYKVLRRGSKSFDI 312
           I CVL       +    Y G YK LRRGS + D+
Sbjct: 341 IRCVLATPVQFVIGWRFYTGSYKALRRGSANMDV 374


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P46100
           Transcriptional regulator ATRX {Homo sapiens}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain;
           non-consensus GC donor splice site at exon boundary
           28614
          Length = 1457

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 235 TPPKVARPPYIGPYKVLRRGSKSFDIEVNGKQLTVTIDRLKPAYITRDDGKREDKQ 402
           T P  A+     P    +  +   +IE NG      +D++ P+     D KR+D Q
Sbjct: 389 TTPNFAKDQVKSPETSTQVHNSEVNIEENGNFSNSDVDKMTPSTHINVDAKRDDSQ 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,977
Number of Sequences: 28952
Number of extensions: 343690
Number of successful extensions: 1073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)