Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11053
         (312 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   6.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          19   9.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    19   9.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    19   9.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 228 ACAGDPPRP 202
           AC G PP+P
Sbjct: 172 ACMGPPPQP 180


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 269 FKIIDIISARDQERPAP 219
           FK+ D  S  + ERP P
Sbjct: 95  FKLKDSSSDSEDERPRP 111


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 311 FFFFFSTLNFV 279
           FF+FF+T N +
Sbjct: 246 FFYFFTTGNII 256


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 311 FFFFFSTLNFV 279
           FF+FF+T N +
Sbjct: 242 FFYFFTTGNII 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,751
Number of Sequences: 336
Number of extensions: 554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)