Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11053
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.5  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    23   8.1  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 311 FFFFFSTLNFVYLIFKIIDIISARDQE 231
           FFF+F+ + F  LIF I+ + S   +E
Sbjct: 356 FFFWFTIIGFGLLIFSIMLLFSIGQEE 382


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 308 FFFFSTLNFVYLIFKIIDIISA 243
           F+F + L+F +LIF ++  IS+
Sbjct: 7   FYFINILSFGFLIFTVLLYISS 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,258
Number of Sequences: 5004
Number of extensions: 9737
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)