Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11053
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0477 - 3688357-3690042                                           27   2.3  
04_03_0235 - 13111282-13111878                                         27   4.1  
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    26   5.4  
12_02_0414 + 18824347-18825161,18826018-18828229                       25   9.5  
05_05_0190 - 23110152-23112137                                         25   9.5  
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    25   9.5  

>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 237 SGAACAGDPPRPASL 193
           +GAA A DPPRP SL
Sbjct: 122 AGAAAAADPPRPPSL 136


>04_03_0235 - 13111282-13111878
          Length = 198

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -1

Query: 228 ACAGDPPRPASLRATRRARH 169
           A A  PP PASL A RR RH
Sbjct: 71  AAAASPPAPASL-AARRCRH 89


>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 248 SARDQERPAPATRPGXR 198
           +A   ERPAPATRP  R
Sbjct: 657 TANKHERPAPATRPRQR 673


>12_02_0414 + 18824347-18825161,18826018-18828229
          Length = 1008

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 287 NFVYLIFKIIDIISARDQERPAPATRPG 204
           NF  L+ +I+ I  A D+E PAPA  PG
Sbjct: 476 NFEKLVDRIM-IQRADDEEDPAPAVVPG 502


>05_05_0190 - 23110152-23112137
          Length = 661

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 252 NFGPRSGAACAGDPPRPASLRATRRA 175
           +FG   GAA A DP RP S  A   A
Sbjct: 460 DFGAVGGAAAAVDPDRPTSSLAVHIA 485


>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 246  GPRSGAACAGDPPRPASLRATRRA 175
            GPR  A      PR A+LRAT R+
Sbjct: 1023 GPRRPAGAVPPTPRRAALRATTRS 1046


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,617,428
Number of Sequences: 37544
Number of extensions: 85010
Number of successful extensions: 322
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)