Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11052
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              58   7e-11
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 678 EMATAASSSSLEKSYELPDGQVITIGNE 761
           EMATAASSSSLEKSYELPDGQVITIGNE
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNE 28


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/64 (23%), Positives = 22/64 (34%)
 Frame = +2

Query: 392 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDRTPPRHPASGLSRSRPHRLPH 571
           PP  S            +P +       V   P P   D T        LS S+P + P 
Sbjct: 765 PPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQPMQPPQ 824

Query: 572 EDPH 583
           ++P+
Sbjct: 825 QNPY 828


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 283  LRVAPEEHPVLLTEAPLNPKANREKM 360
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 433 ASGRTTGIVLDSGDGVSHTVPIYEGSHSPTPS 528
           + G   G   DS   ++ T P Y G  S +PS
Sbjct: 61  SGGVELGWFNDSAAAITSTSPSYPGGGSSSPS 92


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 512 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 610
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 486 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 394
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 490 VPIYEGSHSPTPSCVW 537
           VPIY G+  P P   W
Sbjct: 342 VPIYYGNFPPRPMGPW 357


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 47  GMCKAGFAGD 76
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,809
Number of Sequences: 438
Number of extensions: 5662
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)