Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11051
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 139 3e-34
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 137 1e-33
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 116 4e-27
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 94 2e-20
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 86 3e-18
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 31 0.10
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 30 0.31
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 29 0.41
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.54
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 28 0.95
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.3
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.3
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 2.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 2.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.9
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 2.9
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 3.8
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 3.8
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 26 5.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.1
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 6.7
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 6.7
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 6.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 6.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.8
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 8.8
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 8.8
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 8.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.8
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 139 bits (336), Expect = 3e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +2
Query: 2 PPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK 181
PPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV+EAEK
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEK 522
Query: 182 YRNEDDKQKETIQAKNALESYCFS 253
Y+ ED+ + IQAKN LESY +S
Sbjct: 523 YKAEDEAETSRIQAKNHLESYAYS 546
Score = 75.4 bits (177), Expect = 6e-15
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +1
Query: 256 KSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITK 435
+++++D LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K
Sbjct: 548 RNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAK 607
Query: 436 MYQ 444
+YQ
Sbjct: 608 IYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 137 bits (332), Expect = 1e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 2 PPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK 181
PPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV EAEK
Sbjct: 463 PPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEK 522
Query: 182 YRNEDDKQKETIQAKNALESYCFS 253
Y+ ED+ + IQAKN LESY +S
Sbjct: 523 YKAEDEAESGRIQAKNHLESYAYS 546
Score = 74.5 bits (175), Expect = 1e-14
Identities = 31/63 (49%), Positives = 47/63 (74%)
Frame = +1
Query: 256 KSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPIITK 435
+++++D LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K
Sbjct: 548 RNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAK 607
Query: 436 MYQ 444
+YQ
Sbjct: 608 IYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 116 bits (278), Expect = 4e-27
Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 PPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAE 178
PPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV EAE
Sbjct: 492 PPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAE 551
Query: 179 KYRNEDDKQKETIQAKNALESYCFS 253
++ ED KE I+A+N LE+Y +S
Sbjct: 552 EFAEEDKILKERIEARNTLENYAYS 576
Score = 52.0 bits (119), Expect = 7e-08
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +1
Query: 268 EDEKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGIYNPIITKMY 441
+DE+L K+ DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 583 DDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 93.9 bits (223), Expect = 2e-20
Identities = 45/81 (55%), Positives = 59/81 (72%)
Frame = +2
Query: 5 PAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKY 184
PAP+G PQIEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +AEKY
Sbjct: 507 PAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKY 565
Query: 185 RNEDDKQKETIQAKNALESYC 247
R D +KE I+ N ES C
Sbjct: 566 RASDMARKEAIENGNRAESVC 586
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 86.2 bits (204), Expect = 3e-18
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +2
Query: 2 PPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK 181
PP PRG ++E TF++DANGIL V+A+EK+T + I ITN G LS +I+ M+ A+K
Sbjct: 468 PPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADK 527
Query: 182 YRNEDDKQKETIQAKNALESY 244
++ +D + ++AK+ LESY
Sbjct: 528 FKQQDKDFAKKLEAKSQLESY 548
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 50 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 223
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 224 KNA 232
+A
Sbjct: 118 LDA 120
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 QQKSTMEDEKLKEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 408
Q + + +EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 416 QDNQEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 29.5 bits (63), Expect = 0.41
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 95 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSRS 259
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F ++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKFKKN 579
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.54
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 128 KGRLSKEEIERMVNEAEKYRNEDD 199
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 28.3 bits (60), Expect = 0.95
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCF 250
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y +
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIY 588
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -1
Query: 568 GMLV*STSSMVGPAPPAPGAHLRLRVLRPGSPAYLRGLLRHPGTS---S*LSDCKCLPIL 398
GM+ + + PAPPAP + L V P+ + + + P +S + P
Sbjct: 1464 GMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQ 1523
Query: 397 SACAHTP-PCRPAGWNPA 347
S+ AH P P PA +P+
Sbjct: 1524 SSFAHVPSPAPPAPQHPS 1541
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 65 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 196
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 58 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 162
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 250 QQKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 408
Q + +E EK KEK D D++ DT+ D NQ+ +E E QKE++
Sbjct: 265 QNSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 89 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCFSR 256
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F R
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLFVR 103
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 71 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 232
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 149 EIERMVNEAEKYRNEDDK--QKETIQAKNALESYCFSRSL 262
+ + ++N + RN D+ QK T+Q +A+ CFS S+
Sbjct: 331 KFDALLNFITEMRNVVDQLYQKSTLQPNDAVPGLCFSESI 370
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 128 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSRSL 262
+G L E E NEA++ NE+ E +N E SR L
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 452 EESPEVCRASRAEHPEPE 505
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/53 (20%), Positives = 28/53 (52%)
Frame = +1
Query: 244 LLQQKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 402
L+++ + +++L+E + D ++L K ++W + K++ E +KE
Sbjct: 199 LIREPISSPEQELRENVRDP--YSLLSKIQPRVRWQSHMESQKKKQKEEAEKE 249
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 101 ENKITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSR 256
++++TIT++ S E++E++ N AEK + E + K + ++ LES SR
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSR 336
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Frame = +2
Query: 20 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK------ 181
+ ++ +F + N + +I K+ N+E +K R+ E+ ++++ +K
Sbjct: 1213 IDKVRNSFFKNLNSFYEMYSIAKAENEER---FEKEKRRIMSEDRDKLIRGRQKTSIVAK 1269
Query: 182 YRN-------EDDKQKETIQAKNALES 241
YRN DDKQ + KN+LE+
Sbjct: 1270 YRNKRELPEDSDDKQDTASKDKNSLET 1296
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 140 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 247
S+ E +++ E ++ ED+KQ E + K AL+ +C
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFC 334
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 20 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEK 181
+P TF NG++N+S + ++ N E + DKGR + + ++ E K
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFK 176
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 56 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNA 232
+GIL+ + IEK +K K+ + N+ SK+ + + + +E DK KN
Sbjct: 154 DGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNG 213
Query: 233 LE 238
++
Sbjct: 214 VD 215
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 86 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 214
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 56 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 196
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 232 IGILLLQQKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL--DSNQLADKEEYEHKQK 399
+ L+ Q+KS +E++++KE+++ K IL + I + +S Q ++EEY + K
Sbjct: 983 LSCLVFQEKSEVENQRMKEELAGPLK--ILQEMARRIAKVSKESKQELNEEEYVNSFK 1038
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 8.8
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Frame = -2
Query: 564 CWFNRPPRWWGQRLQPRGRTSGSGC--SAREARH-TSGDSSGTLVHLRNYRIVNAXXXXX 394
C F P W LQ TS +GC + R RH S SG + + V A
Sbjct: 125 CSFTLPATWSEPPLQISLSTSSNGCRLAQRLLRHVVSSLPSGMPEAIERFGRVRA--ITK 182
Query: 393 XXXXXXXXXXXXXXQPLDGVVALVEDGLLVRVRD 292
PL+ +V + ED LL V D
Sbjct: 183 TPEKKQWINHVSDFWPLEKLVRMTEDDLLAIVSD 216
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 8.8
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = +1
Query: 265 MEDEKLKEKISDSDKQTILDKCNDTIKWL 351
+++++++ K+S D L+ CN+ + L
Sbjct: 260 LKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 247 LQQKSTMEDEKLKEKISDSDK 309
L++ +EKL+EKI+ SDK
Sbjct: 472 LKKLDAFHEEKLREKINSSDK 492
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.8
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Frame = +2
Query: 44 DIDANGILNVSAIEKSTNKENKIT----ITNDKGRLSKEEIER-----MVNEAE-KYRNE 193
D+D VS IEK+T + +T N G+L K EIE ++N+ E
Sbjct: 1209 DLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKPDVLNQVSLSIEEE 1268
Query: 194 DDKQKETIQAKNA 232
K KE+ NA
Sbjct: 1269 KPKNKESEVDNNA 1281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,430
Number of Sequences: 5004
Number of extensions: 39437
Number of successful extensions: 228
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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