Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11048
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ...    62   5e-11
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   1.7  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    26   2.9  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   3.9  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   5.1  

>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 61.7 bits (143), Expect = 5e-11
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG+V V+LFN+SD DF +K GDRIAQLI E+I  P +  V +L  T R
Sbjct: 79  DADYRGHVRVLLFNYSDVDFPIKVGDRIAQLILERIVNPPVILVESLEATVR 130


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 182 PVEPNPPSPL*VTDKLATSCNTG 114
           PVEP+PPSP  +   + TS +TG
Sbjct: 230 PVEPDPPSPEEICCIMYTSGSTG 252


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -3

Query: 258 NSYRIDKKKMNKIEVF 211
           NSY +DKK+MN+++ F
Sbjct: 44  NSYIVDKKRMNELKKF 59


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 234  FFYLFYKNL*TYVNFNFLKVYEKQSKLIFRNIFNFSCIV*LSI 362
            FF+L    +  +V +    +YE      F  +F+  C++ L I
Sbjct: 1310 FFFLMQAIMQPFVGYTGQSLYESWGLTCFNTLFSSLCVIGLGI 1352


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -3

Query: 222 IEVFLNAFYFLFFSCGAKSTITPLSYRQISNFL*HRIVDLLTNKLC-NSVSFFHTKVCVR 46
           ++ FL AFY ++F C  +     L Y   S F+   I   +   L    ++FF      R
Sbjct: 298 LDAFLPAFYDVYFQCRTRLLKPVLDYHLKSFFMEKSISSYIQKSLALLQLTFFDENKLFR 357

Query: 45  VI 40
            I
Sbjct: 358 EI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,060
Number of Sequences: 5004
Number of extensions: 32768
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)