Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11048
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)                 60   1e-09
SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)                59   1e-09
SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)           27   5.1  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               27   5.1  

>SB_16604| Best HMM Match : dUTPase (HMM E-Value=0.078)
          Length = 62

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 132
           D DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 18  DRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSIVEV 61


>SB_20580| Best HMM Match : dUTPase (HMM E-Value=0.0013)
          Length = 103

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 28/44 (63%), Positives = 33/44 (75%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEV 132
           D DYRGNVGVVLFN   + + VK+GDRIAQLI E+I  P + EV
Sbjct: 18  DRDYRGNVGVVLFNLGSSAYEVKQGDRIAQLIVERIQTPSVVEV 61


>SB_43570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +3

Query: 219 QFCSFFFYLFY 251
           QFC FF+YLFY
Sbjct: 40  QFCQFFYYLFY 50


>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 246 IDKKKMNKIEVFLNAFYFLFFS-CGAKSTITPLSYRQI 136
           +D+ K+N+  +   AFYF F S  GA     P+ +RQ+
Sbjct: 1   MDRLKINRELLVYKAFYFFFLSGLGALFPYLPVYFRQM 38


>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
          Length = 696

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 246 IDKKKMNKIEVFLNAFYFLFFS-CGAKSTITPLSYRQI 136
           +D+ K+N+  +   AFYF F S  GA     P+ +RQ+
Sbjct: 1   MDRLKINRELLVYKAFYFFFLSGLGALFPYLPVYFRQM 38


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 117 CVTGSC*FVCNSKG 158
           C+ GSC F CNSKG
Sbjct: 240 CIGGSCLFRCNSKG 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,509,069
Number of Sequences: 59808
Number of extensions: 204568
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)