Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11048
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    66   1e-11
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    66   1e-11
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    31   0.37 
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    27   6.0  

>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN  + DF VKKGDRIAQL+CE+I      +V +L VT+R
Sbjct: 426 DSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQIALCTYSKVESLEVTER 477



 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/52 (59%), Positives = 36/52 (69%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN +D  F VKKGDRIAQLICEKI + V +  + L  T R
Sbjct: 263 DSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYEAASELENTDR 314



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN + T F VK GDRIA+LICE+I     +EV +L  T R
Sbjct: 107 DSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIGNGTYEEVKSLPSTNR 158


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN  + DF VKKGDRIAQL+CE+I      +V +L VT+R
Sbjct: 426 DSDYRGEVKVLLFNFGENDFEVKKGDRIAQLVCEQIALCTYSKVESLEVTER 477



 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 31/52 (59%), Positives = 36/52 (69%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN +D  F VKKGDRIAQLICEKI + V +  + L  T R
Sbjct: 263 DSDYRGEVKVLLFNFTDNAFEVKKGDRIAQLICEKIGHCVYEAASELENTDR 314



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG V V+LFN + T F VK GDRIA+LICE+I     +EV +L  T R
Sbjct: 107 DSDYRGEVKVLLFNFNTTAFEVKTGDRIAKLICEQIGNGTYEEVKSLPSTNR 158


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = -3

Query: 267 KFINSYRIDKKKMNKIEVFLNAFYFLFFSCGAKS---------TITPLSYRQISNFL*HR 115
           +F N + I KK + K     N F+FL F+   KS         T    S  +I NFL   
Sbjct: 322 RFFNFFYISKKILTKKFFKKNLFFFLIFNNLEKSIFSNFKKSNTFFQFSKNKIFNFL--- 378

Query: 114 IVDLLTNKLCNSVSF 70
           I +L TN +C+S  F
Sbjct: 379 IKNLYTNAICDSEMF 393


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 349 TMQLKLKMFLKISLDCFSYTFKKL 278
           +M  +L  F+KI LDCF + ++KL
Sbjct: 893 SMVSRLNPFVKIILDCFDFKYEKL 916


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 316 FLETFSISVALYSYLSMIFLLNVSSPNK 399
           F+++F+I V L + + +IFL+   SP K
Sbjct: 10  FIQSFAIFVLLITNILIIFLVKTKSPTK 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,233
Number of Sequences: 27780
Number of extensions: 182386
Number of successful extensions: 444
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)