Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11048
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 54  CVRVIKKNNSNITSI 10
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 54  CVRVIKKNNSNITSI 10
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3

Query: 54  CVRVIKKNNSNITSI 10
           C++ IK+NN+++T +
Sbjct: 426 CLKAIKENNADLTVV 440


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 89  SLFVRRSTILCYRKLLI 139
           SLF+R  T   YR++L+
Sbjct: 136 SLFIREQTEEMYREMLL 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,499
Number of Sequences: 438
Number of extensions: 2179
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)