Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11048
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate nucleotido...    71   5e-13
At3g19340.1 68416.m02454 expressed protein                             27   5.5  
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    26   9.7  

>At3g46940.1 68416.m05095 deoxyuridine 5'-triphosphate
           nucleotidohydrolase family contains Pfam profile:
           PF00692 deoxyuridine 5'-triphosphate nucleotidohydrolase
          Length = 166

 Score = 70.5 bits (165), Expect = 5e-13
 Identities = 35/52 (67%), Positives = 38/52 (73%)
 Frame = +1

Query: 1   DEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPVLQEVANLSVTQR 156
           D DYRG VGV+LFNHSD DF VK GDRIAQLI EKI  P + EV +L  T R
Sbjct: 105 DADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVR 156


>At3g19340.1 68416.m02454 expressed protein
          Length = 487

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 213 ILQFCSFFFYLFYKNL*TYVNFNFLKVYEKQ 305
           +L +C+  ++ F +N+ TY N     +Y+KQ
Sbjct: 345 VLGYCAKTYFTFQQNMATYQNLITQSMYDKQ 375


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 117 RIVDLLTNKLCNSVSFFHTKVCVRVIKKNNSNIT 16
           R++DL  NKL  ++  F +   + V+    +N+T
Sbjct: 565 RLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLT 598


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,415,087
Number of Sequences: 28952
Number of extensions: 150798
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)