Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11046
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   1.3  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   1.3  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.8  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   5.4  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 248 LRFCI*CIQIFTWVYL*LLMNIYT 319
           LRFC+  + IFT+V + +L  +YT
Sbjct: 317 LRFCLNILSIFTYVPM-ILYCVYT 339


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 248 LRFCI*CIQIFTWVYL*LLMNIYT 319
           LRFC+  + IFT+V + +L  +YT
Sbjct: 42  LRFCLNILSIFTYVPM-ILYCVYT 64


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 545 SLMSRSFCYVRSVVHENVPYLVSIPVSCHQLCSNV 649
           SL  R F   + V H+N PY    P   H+L  ++
Sbjct: 332 SLAFRIFQSTQYVRHKNTPYHTPEPDCIHELLGHM 366


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 241 IIVTILYLVHSNIHLGISLTFN 306
           +I+T+LY ++S ++  I L FN
Sbjct: 302 VILTLLYSLNSCVNPWIYLAFN 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,552
Number of Sequences: 336
Number of extensions: 3290
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)