Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11045
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1022 - 8815675-8816809,8819696-8819907 31 1.4
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 30 2.4
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240... 29 3.1
01_01_0150 - 1344247-1345011 29 3.1
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 29 4.1
06_03_1310 + 29238644-29240260 29 4.1
01_03_0147 - 13125065-13126679,13126802-13127664 29 5.5
01_01_0715 - 5542648-5543219,5543352-5543544 29 5.5
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 28 9.6
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 28 9.6
>07_01_1022 - 8815675-8816809,8819696-8819907
Length = 448
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 250 PRPRPPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDG 369
PRPR L++ P G+ P ++PT W+C+ T +G
Sbjct: 309 PRPRTLVLATFSPSHFEGK--PAENPTSWVCTKTEPYREG 346
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 430 TGSAQPPARGADAHPRGQCSVRPQDEQSGNTSRRSD 323
+G+ +P RG PRG + P+D +SG+ S RSD
Sbjct: 267 SGTKRPVHRGLG--PRGWSTAGPRDRRSGSASGRSD 300
>07_03_1764 +
29322683-29323387,29323809-29323889,29323968-29324072,
29324453-29325382,29326728-29326856,29326953-29327042,
29327237-29327293,29327362-29327394
Length = 709
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -2
Query: 430 TGSAQPPARGADAHPRGQCSVRPQDE----QSGNTSRRSDVVPV*RGHPGD 290
+GS R A+ RG CS PQD + G S R +V R HP D
Sbjct: 20 SGSGHRRDRYAEGGRRGSCSPHPQDRYGSGRRGGGSGRGGLVDGDRSHPRD 70
>01_01_0150 - 1344247-1345011
Length = 254
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 304 RVIPGQHPTFWMCSPTVHPEDGHCTAPGDA-RLPPGLVAGP 423
R+ P HP FW C + P G C A A R PG GP
Sbjct: 130 RLPPRIHPPFWRCDDELKP--GQCFAACKACREAPGPFPGP 168
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 634 EPSTGHELMSTRAHRARHTGLTAQTTLWYIVHE 536
+PSTG +T A R++ GLT W V E
Sbjct: 553 DPSTGDTSATTTARRSKFAGLTQDPCFWARVEE 585
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 262 PPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDARLPP 405
PP+ SS+ P G V+P P PT P H PG PP
Sbjct: 438 PPSSSSSPPTEHPGYVLPPLTPP----PPTTTPPGHHAPVPGTPSSPP 481
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 404 GGRRASPGAVQCPSSG*TVGEHIQKVGCCPG-ITRPPGR 291
GG ASPGA SS + G + V CC +T P R
Sbjct: 91 GGAAASPGAAAATSSSSSSGGFLSWVRCCVNKVTTLPAR 129
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 250 PRPRPPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDA 393
P P PPA + G R +P P P P G+ TAP A
Sbjct: 159 PSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPPAGGNFTAPSPA 206
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 250 PRPRPPALSSAGPHRPGG 303
P P PPAL A P PGG
Sbjct: 66 PPPPPPALPQAAPRPPGG 83
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 326 GCCPGITRPPGRCGPALDRA 267
GC + PPG+ GPA+D A
Sbjct: 507 GCSAAMEEPPGKKGPAMDPA 526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,182,498
Number of Sequences: 37544
Number of extensions: 593268
Number of successful extensions: 1964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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