Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11045
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             32   0.60 
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     30   1.8  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)                29   4.2  
SB_3111| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -1

Query: 434 RHGVGPATSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPALDR 270
           R G G    PGG+  SPG+   PS G T        G  P  +R PG   P +DR
Sbjct: 580 RSGFGQGL-PGGQGFSPGSQGTPSQGYTPNRLASPSGYGPSDSR-PGSSQPGMDR 632


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 572 ESCVTRTMGTCAHELMTRRWFIEILVCSRIINKLYN*EESSRYLYVR 712
           +S + R+ G+  H   +    +E LV S I NK++  +++  Y+Y R
Sbjct: 835 DSSIQRSSGSSEHTCRSTERDLETLVNSCITNKVFTPQDNRHYVYFR 881


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +1

Query: 127 NHIYMCILFLRERDRISXLIFNQKKTLV----*SAQAPD*LLQCDPRPRPPALSSAGPHR 294
           N + MC L  R+R R S + +  K   V       +    +L    R R  +++      
Sbjct: 45  NQVVMCYLHSRQRTRWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104

Query: 295 PGGRVIPGQH 324
           PGGRV+P  H
Sbjct: 105 PGGRVLPTYH 114


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 650 RRGSR*TIDGS*AHEHTCPS 591
           RRG R TI G  +H+HTCP+
Sbjct: 175 RRGLRHTICGGRSHDHTCPA 194


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 289 HRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDARLPP 405
           H P  R  PGQ+P     SP V    GH T  G+   PP
Sbjct: 484 HPPQHRAPPGQYPPLG-ASPPVQHGRGHATGRGEFAGPP 521


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 408 PGGQTRIPGGSAVSVLRMNSRGTHP 334
           PGG T I  GS    LR +  GTHP
Sbjct: 903 PGGHTLISNGSGGHTLRTDPGGTHP 927


>SB_24909| Best HMM Match : Mab-21 (HMM E-Value=3.4e-06)
          Length = 702

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 510 CGGGAGPAPSWTMYHNVV 563
           CGGG  PA  W MY + V
Sbjct: 154 CGGGFDPASDWVMYRSTV 171


>SB_3111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +1

Query: 61  ALDCLYPETAPGXXXXXXXXXPNHIYMCILFLRERDRISXLIFNQKKTLV*SAQAPD*LL 240
           A+ C  P   PG          N +  C L  R+R R S + +     ++ + QA + ++
Sbjct: 140 AVKCYLPGKKPGGHVLPTYQAKNQVVKCYLHTRQRTRQSSVTYKPGGQMLPTYQAKNQVV 199

Query: 241 QC 246
            C
Sbjct: 200 MC 201


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 327 DLLDVFPDCSS*GRTLHCPRGCASAP 404
           + +DVF DC      LH PRG A +P
Sbjct: 816 EFVDVFRDCRGAFHVLHEPRGLAVSP 841


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,383,945
Number of Sequences: 59808
Number of extensions: 597622
Number of successful extensions: 1548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)