Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11045
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical pr... 29 4.9
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.9
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 29 4.9
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 29 4.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.9
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 28 6.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 6.5
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 28 6.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 6.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 6.5
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 6.5
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 28 8.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 8.6
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 28 8.6
AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical ... 28 8.6
AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homol... 28 8.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 8.6
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/62 (33%), Positives = 25/62 (40%)
Frame = +1
Query: 223 APD*LLQCDPRPRPPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDARLP 402
A D C P P PA ++ P PGG PG P+ P P G PG+ P
Sbjct: 162 ASDFCFDCPPGPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGPPGPP--GPPGGPGNDGQP 219
Query: 403 PG 408
G
Sbjct: 220 GG 221
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGP 282
G GP PG G SPG P + + G+ Q+ PG + PG GP
Sbjct: 167 GQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGSQGP 217
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -1
Query: 422 GPATSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGP 282
GP+ P G + GA P GE PG PPG GP
Sbjct: 190 GPS-GPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGP 235
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGP 282
G GP PG G SPG P + + G+ Q+ PG + PG GP
Sbjct: 167 GQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPGPQGP 217
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 244 CDPRPRPPALSSAGPHRPGGRVIPGQ 321
C P P P +S P PG R +PG+
Sbjct: 103 CPPGPPGPPGNSGSPGNPGSRGVPGE 128
>Z68320-1|CAB63328.2| 278|Caenorhabditis elegans Hypothetical
protein W07A12.5 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +1
Query: 286 PHRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDARLPPG 408
P +PGG IPG+ P DG C AR PPG
Sbjct: 239 PGKPGGNGIPGEPGPIGNQGP--RGSDGSCEHCPPARTPPG 277
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 422 GPA--TSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGP 282
GPA P G +PGA P + G++ Q+ PG PG GP
Sbjct: 167 GPAGPEGPAGDAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAGAPGPQGP 215
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 422 GPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCG 285
GP +PG GRR G P + GE++++V PG PG G
Sbjct: 337 GPVGAPGQKGRRGEKGKDGEPGAPGAPGENVKEVPAIPGPQGTPGPRG 384
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPA--TSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA T P G +PG P S G Q+ PG + PG GPA
Sbjct: 172 GPGPAGPTGPTGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGPQGPA 223
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 PRPRPPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDGHCT-APGDARLPPGLVAGPT 426
PRP PP +SS P P ++ + P P + + AP PP ++ GP
Sbjct: 531 PRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPP 590
Query: 427 P 429
P
Sbjct: 591 P 591
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPA--TSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA P G +PG P G+ Q+ PG + PG GPA
Sbjct: 162 GPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPSGAPGPQGPA 213
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA PG G + GA P G Q PG PPG GPA
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPA 232
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 223 APD*LLQCDPRPRPPALSS--AGPHRPGGRVIPGQ 321
AP ++C P P PA S+ AGP P GR PGQ
Sbjct: 142 APSDCIKCAPGPAGPAGSAGPAGPKGPDGR--PGQ 174
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA PG G + GA P G Q PG PPG GPA
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPA 232
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 619 HELMSTRAHRARHTGLTAQTTLWYIVHEGAGPAP 518
H+ MS ++H HT ++ + L E GP+P
Sbjct: 416 HDKMSDKSHEEEHTSVSTDSALCSETSEVRGPSP 449
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA PG G + GA P G Q PG PPG GPA
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPA 232
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA PG G + GA P G Q PG PPG GPA
Sbjct: 181 GPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPAGPPGPAGPA 232
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 422 GPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
GPA PG G+ +PG P +G T + + G PG PPG GPA
Sbjct: 204 GPAGPPGPDGQPGAPGPDGQPGAGGTTSTN--QPGP-PGPAGPPGPAGPA 250
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = -1
Query: 428 GVGPA--TSPGGRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
G GPA P G +PG P G+ Q+ PG PG GPA
Sbjct: 162 GPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPA 213
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -2
Query: 427 GSAQPPARGADAHPRGQCSVRPQDEQSGNTSRRSDVVPV*RGHPGDAAP 281
G PP DA GQ + G + +RS +P G PG P
Sbjct: 167 GPPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRPGPQGP 215
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Frame = +1
Query: 244 CDPRPRPPALSSAGPHRPGGRVIPGQ-----HPTFWMCSPTVHPEDGHC-TAPGDARLPP 405
C P P PA P +PG PGQ P C PT P C P PP
Sbjct: 104 CLPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
Query: 406 GLVAGP 423
G P
Sbjct: 164 GAPGDP 169
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -1
Query: 422 GPATSPG--GRRASPGAVQCPSSG*TVGEHIQKVGCCPGITRPPGRCGPA 279
GPA PG G+ S G P + H+ V PG PPG GPA
Sbjct: 207 GPAGPPGPSGQPGSNGNAGAPGAP----GHVVDVPGTPGPAGPPGPAGPA 252
>AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical
protein W03F9.10 protein.
Length = 602
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 342 FPDCSS*GRTLHCPRGCASAPRAGGWADP 428
FP G P GCA AGGW P
Sbjct: 343 FPHIKIPGLNAPIPEGCAFGYHAGGWGKP 371
>AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homolog
protein 1 protein.
Length = 323
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 441 LTSPRGRPSHQPGGQTRIPGGSAVSVLRMNSRGTH 337
+ SPRGR PG +T GS +S M+S G H
Sbjct: 157 IISPRGR--FDPGKKTSAAAGSMLSENEMSSHGGH 189
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Frame = +1
Query: 244 CDPRPRPPALSSAGPHRPGGRVIPGQ-----HPTFWMCSPTVHPEDGHC-TAPGDARLPP 405
C P P PA P +PG PGQ P C PT P C P PP
Sbjct: 104 CLPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPP 163
Query: 406 GLVAGP 423
G P
Sbjct: 164 GAPGDP 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,956,489
Number of Sequences: 27780
Number of extensions: 449707
Number of successful extensions: 1176
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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