Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11045
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 574 LTAQTTLWYIVHEGAGPAPPPQTE*LTSSAI 482
           LTA     ++  + A P PP  +E  T S+I
Sbjct: 337 LTAMMHHLHVAKQMASPEPPKSSESSTGSSI 367


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 103 NSIRAPSPDTDSPAPERXHTKVASETS 23
           +S R+PSP   +  P + H K  S+ +
Sbjct: 39  SSSRSPSPSLLTSQPHQDHNKEKSKNN 65


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 250 PRPRPPALSSAGP 288
           P P PP  SS+GP
Sbjct: 341 PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,696
Number of Sequences: 438
Number of extensions: 5646
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)