Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11045
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase / galact...    30   2.0  
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains...    28   6.0  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   8.0  

>At1g71990.1 68414.m08321 alpha-(1,4)-fucosyltransferase /
           galactoside 3(4)-L-fucosyltransferase (FUT13) (FucTC)
           identical to SP|Q9C8W3 Alpha-(1,4)-fucosyltransferase
           (EC 2.4.1.-) (FT4-M) (Galactoside 3(4)-
           L-fucosyltransferase) (FucTC) (AtFUT13) {Arabidopsis
           thaliana}; identical to cDNA alpha1,3-fucosyltransferase
           homologue (FucTC) GI:13992485
          Length = 401

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 181 GXIFYPFPVERVYTCRCG*VKIITRWNSIRAPSPD 77
           G  + P  +E +Y+CRCG   + T+ +S+ A SPD
Sbjct: 110 GWTWIPDNLENLYSCRCGMTCLWTK-SSVLADSPD 143


>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 491

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 483 IAEDVSYSVCGGGAGPAPS 539
           +++D+S S+CGGG G +P+
Sbjct: 442 VSDDMSGSLCGGGGGSSPA 460


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = +1

Query: 238 LQCDPRPRPPALSSAGPHRPGGRVIPGQHPTFWMCSPTVHPEDGHCTAPGDARLPPGLVA 417
           L   P P P   SS  P  P    +P   PT+   SP   P   H  +P     PP +  
Sbjct: 699 LASPPPPAPYYYSSPQPPPPPHYSLPPPTPTYHYISPPPPPTPIH--SPPPQSHPPCIEY 756

Query: 418 GPTP 429
            P P
Sbjct: 757 SPPP 760


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,376
Number of Sequences: 28952
Number of extensions: 390302
Number of successful extensions: 979
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)