Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    48   1e-04
UniRef50_UPI0000E46329 Cluster: PREDICTED: similar to ADAMTS-lik...    32   0.26 
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr...    33   4.4  
UniRef50_Q6PJ69 Cluster: Tripartite motif-containing protein 65;...    32   5.8  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 48.0 bits (109), Expect = 1e-04
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 243 FQLSGIXXXXXXXXXXXYYGNLVAGSIVSQLTAAAMVAPTP 365
           F  +GI           YYGN+VAGS++SQLT+AAM+APTP
Sbjct: 34  FGSAGIAAGSTAAAAQAYYGNVVAGSVISQLTSAAMLAPTP 74



 Score = 41.5 bits (93), Expect = 0.009
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 193 IYGTGGLVTPLVAPVLGFSSA 255
           IYGTGGL+TP+VAP+LGF SA
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSA 37


>UniRef50_UPI0000E46329 Cluster: PREDICTED: similar to ADAMTS-like
           3; n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to ADAMTS-like 3 - Strongylocentrotus purpuratus
          Length = 1156

 Score = 31.9 bits (69), Expect(2) = 0.26
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 227 WLPCSVSAQRNSGTKHSRCCTSILRKFSGRQHCVTVDCSGHGSPHAMR*C 376
           W PCS S    + T+  R C   L+ F        +DC G   PH +  C
Sbjct: 608 WSPCSTSCGPGTRTRSVR-CKVYLKAFDSNFDISDLDCQGLPRPHDVEEC 656



 Score = 23.8 bits (49), Expect(2) = 0.26
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 380 TSPVLDIAPGSDLFXVIW 433
           T P L++ PG D+   IW
Sbjct: 693 TDPTLELGPGPDVDIFIW 710


>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
           Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
           cytosolic protein - Granulobacter bethesdensis (strain
           ATCC BAA-1260 / CGDNIH1)
          Length = 90

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 129 QKLQEHGA--SSCISGKRGRRCCNIWHWGSGDSISGSRAR 242
           Q L+EHG    S ++G+R  RC N WH G  D +   R R
Sbjct: 42  QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80


>UniRef50_Q6PJ69 Cluster: Tripartite motif-containing protein 65;
           n=16; Eutheria|Rep: Tripartite motif-containing protein
           65 - Homo sapiens (Human)
          Length = 517

 Score = 32.3 bits (70), Expect = 5.8
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 214 PDPQCHILQHRRPRLPLMQLEAPCSCNFCSLRAIRRYKSYYVD*GSLEYDSSTQESV 44
           PDP     +H RP     + E  C C+ C++R  R ++   +D   L+ ++  + S+
Sbjct: 89  PDPAARCPRHGRPLELFCRTEGRCVCSVCTVRECRLHERALLDAERLKREAQLRASL 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,337,273
Number of Sequences: 1657284
Number of extensions: 8091120
Number of successful extensions: 18726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18724
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)