Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   2.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.8  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.8  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 336 STVTQCCRPLNFRSMLVQQRLCFVP 262
           ST    CR   FR+   +  +CF P
Sbjct: 383 STTANSCRSSTFRNNRDEYNVCFRP 407


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 477 HRIDKFIKNLNA 442
           HR+ K IK LNA
Sbjct: 220 HRLSKLIKQLNA 231


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 357 GLPWPLQSTVTQCCR 313
           G+ WPL ST+ +  R
Sbjct: 525 GMKWPLLSTINRHLR 539


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 332 VDCSGHGSP 358
           V+CS HG+P
Sbjct: 43  VECSAHGNP 51


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 272 ASCRYSAELKPSTGATNGVTRPPVPYI 192
           A C   +EL P  G+T G +   + Y+
Sbjct: 8   AGCNPDSELFPGFGSTCGGSSSSMAYL 34


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 253 LS*NRAREPLMESP 212
           LS NR+ EP ME P
Sbjct: 66  LSENRSHEPEMERP 79


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 253 LS*NRAREPLMESP 212
           LS NR+ EP ME P
Sbjct: 86  LSENRSHEPEMERP 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,398
Number of Sequences: 336
Number of extensions: 2179
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)