Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   1.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   4.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   5.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   5.9  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 129 QKLQEHGASSCISGKRGRRCCNIWHWGSG 215
           Q   E  A +C  G  G  C  +W+W +G
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNNG 422


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 257 NSGTKHSRCCTSILRKFSGRQHCVTVDCSGHGSP 358
           NSGT+ +       RKF+G++  + +    HG P
Sbjct: 133 NSGTEANITAIIAARKFTGKRAVIAMHGGYHGGP 166


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 196 ILQHRRPRLPLMQLEAPCSCNFCSLRA 116
           I Q     LP + L +PCS   CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 9   NRVSVIPQFHSKTDSCVEESY--SKLP 83
           N+  ++P+    +D CV++SY  SK P
Sbjct: 223 NKARIVPKRSMSSDGCVDKSYQMSKTP 249


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 257 SAELKPSTGATNGVTRPPVP 198
           SA L P+T A  GV  PP+P
Sbjct: 490 SAPLPPTTFAPPGVPLPPIP 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,592
Number of Sequences: 5004
Number of extensions: 32418
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)