Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     31   0.64 
11_05_0087 + 18970741-18972702                                         29   1.5  
12_02_1180 + 26727171-26727239,26728782-26729642                       29   2.6  
09_06_0369 + 22607676-22608131                                         27   6.0  
09_02_0338 + 7426999-7428322,7428390-7428646                           27   6.0  
02_05_0132 - 26109152-26109852,26109962-26110358                       27   7.9  

>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 293 CLCSSGCASCRYSAELKPSTGAT 225
           C C +GC  C+YS E++P+T  T
Sbjct: 14  CQCGNGCGGCKYS-EVEPTTTTT 35


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 260 SGTKHSRCCTSILRKFSGRQHCVTVDCSGHGSPH 361
           +GTK   CC  +  +F      V   C GHGS H
Sbjct: 327 AGTKEDGCCARL--RFPAATALVLAKCRGHGSHH 358


>12_02_1180 + 26727171-26727239,26728782-26729642
          Length = 309

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 293 CLCSSGCASCRYSAELKPSTGATNGVTRPPVP 198
           CL +S   +   SAEL P T A+ G  +P +P
Sbjct: 40  CLSTSASCTNPVSAELPPITMASQGAAKPKLP 71


>09_06_0369 + 22607676-22608131
          Length = 151

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 226 LMESPDPQCHILQHRRPRLPL 164
           L+ SPDP+CH  +  R R P+
Sbjct: 87  LLSSPDPECHETEVGRDRAPV 107


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 226 LMESPDPQCHILQHRRPRLPLMQLEAPCSCNFCSLRAIRRYKSYYVD 86
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>02_05_0132 - 26109152-26109852,26109962-26110358
          Length = 365

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 290 LCSSGCASCRYSAELKPSTGATNGVTRP 207
           LC  G A   +SA ++P +GAT    RP
Sbjct: 210 LCDFGFAHVGFSAAVRPPSGATRAWGRP 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,131
Number of Sequences: 37544
Number of extensions: 244510
Number of successful extensions: 517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)