Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)             28   4.6  
SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   6.1  

>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
          Length = 950

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 281 CCTSILRKFSGRQHCVTVDCSGHGSP-HAMR*C 376
           CC ++       +H VT+   GHGS  HA+  C
Sbjct: 246 CCNTLFGGHGSARHAVTLCIGGHGSARHAVTLC 278


>SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 233 PCSVSAQRNSGTKHSRCCTSILRKFSGRQHCVTVDCSGHGSPHAMR*C*TSPVLDIAPGS 412
           PC  +  ++ GT+H +  +S L +  G   C  +      +P++ R C    +L IAP S
Sbjct: 16  PCPEAEDKSFGTRHLKNSSSFLLRKDGHSRCAILTI----APYSRRRC---AILAIAPYS 68


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 238 AREPL-MESPDPQCHILQHRRPRLPLMQLEAPCSCNFCSLRAI 113
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,193
Number of Sequences: 59808
Number of extensions: 272411
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)