Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    31   0.43 
U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   5.3  

>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 238 AREPLMESPDPQCHILQHRRPRLPLMQLEAPCSCNF 131
           +++PL ESP P  H+  H+ P +    ++   + NF
Sbjct: 888 SQQPLQESPQPNLHLQHHQTPPMQSQMMQPVVTDNF 923


>U20864-7|AAK68357.1|  859|Caenorhabditis elegans Hypothetical
           protein F32A5.2b protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 287 CSSGCASCRYSAELKPSTGATNGVTRPP 204
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 287 CSSGCASCRYSAELKPSTGATNGVTRPP 204
           C   C +C     ++P+T A N + RPP
Sbjct: 68  CQLACNTCTRKNVIRPATKAPNRMRRPP 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,213,092
Number of Sequences: 27780
Number of extensions: 193326
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)