Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11042X
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 67  RTLNFLNQHSSFY 105
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 76  NFLNQHSSFYTCVSLEESKNYR 141
           N   +HS  YTCV+   +   R
Sbjct: 678 NLAAEHSGDYTCVAANPAAEVR 699


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 214 PDPQCHILQHRRPRLPLMQLE 152
           P+P   +++H  P LP   LE
Sbjct: 492 PEPLIELIEHWMPLLPNWILE 512


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 395 RERVMFSITSWRGGYHG 345
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 395 RERVMFSITSWRGGYHG 345
           RE + F  T W   Y+G
Sbjct: 424 REAITFQYTDWEEVYNG 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,193
Number of Sequences: 438
Number of extensions: 2267
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)