Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11041
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   1.2  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   2.7  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    25   3.6  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   3.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   3.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   6.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   6.3  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    24   8.4  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 151 GTNFSNEIRTQQMFTIYLPRTIRLWNELPSTVFPDAMTCPSSNEACGEY*AVGSGLVL 324
           G  F+    T+ + T  + RT++ WN   ST  P+ +    S      +   G G++L
Sbjct: 416 GLEFNRACETR-LLTCAMDRTVKFWNYEKSTEEPEHLITTDSPVWKARFTPFGDGVIL 472


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 114 TNAPEVLSFRPRRFHKTVYG 55
           TNAPE+L  R +  H  V+G
Sbjct: 51  TNAPEILGGRVKTLHPAVHG 70


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 375 T*W*VVTVAHGLQ*CQGQNQAAAYRLILST 286
           T W +V++ HGLQ C   N   A+ ++ +T
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHLVVSAT 230


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 106 CIRIVRCTGVRNSLPGTNFSNEIRTQQMFTIYLPRTIRLWN 228
           C++ V   GV  S+ G  +S      ++F+I    TI  WN
Sbjct: 56  CLKTVLYGGVDRSIEGIVWSTGEEELRLFSIGFSTTITEWN 96


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 213 GTWQVNRKHL-LSTYF 169
           GTW VNR+H  +S YF
Sbjct: 53  GTWYVNRRHAPISVYF 68


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 410 FIALVCRRAYGPPDGEWLPSPMDFSNARGRTK 315
           FI L CR+++  P    +P P D  + +G +K
Sbjct: 688 FIQLACRKSFRSPVSAGVPIPKDV-DEKGHSK 718


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 293 SPQASFEEGHVIASGNTVDGSS 228
           SPQAS+ +  +++ G  V+GSS
Sbjct: 353 SPQASYRKAALLSIGVAVEGSS 374


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 105 PEVLSFRPRRFHKTVYGNGAYIVSTS 28
           P VL   P     +V GNG YIV T+
Sbjct: 355 PAVLKHSPNGRFVSVCGNGEYIVYTA 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,620
Number of Sequences: 5004
Number of extensions: 43585
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)