Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11041
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 30 0.87
06_01_0734 + 5419951-5420475 29 2.0
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757... 28 2.7
01_01_0929 - 7344911-7345978 28 3.5
08_01_0541 + 4702930-4703328,4703411-4703506,4703601-4703649,470... 27 4.6
10_02_0172 - 6162692-6163066 27 6.1
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019... 27 6.1
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 6.1
>08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.9 bits (64), Expect = 0.87
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 157 NFSNEIRTQQMFTIYLPRTIRLWNELPSTVFPDAMTCPS 273
+F N IR+ Q+F++ +P LW +P + A+ P+
Sbjct: 929 SFENSIRSYQIFSLTVPSITELWTLIPMVMSAIAVLNPA 967
>06_01_0734 + 5419951-5420475
Length = 174
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 271 SSNEACGEY*AVGSGLVLPLALLKSMGDGNHSPSGGPYARLH 396
S+ A + G GL+ LA L MGDG G PY R H
Sbjct: 96 SAAAAAADRRGAGGGLMYLLAQLMGMGDGG----GSPYGRWH 133
>03_06_0415 -
33775143-33775305,33775438-33775565,33775654-33775761,
33775809-33775909,33776265-33776805,33777290-33777847
Length = 532
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 407 IALVCRRAYGPPDGEWLPSPMDFSNARGRTK 315
+AL C R G PDG+ LP P D ++ G K
Sbjct: 118 LALACTRNSGSPDGQHLP-PKDTTSMPGLRK 147
>01_01_0929 - 7344911-7345978
Length = 355
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 165 RKIGTWQRVSNTGASHDTNAPEVLSFRPRRFHKTVYGNG 49
R G W ++ A HD +A EV +FRP + + G
Sbjct: 257 RLTGQWSLFASRHAMHDGDAVEVRAFRPPAWQARLESRG 295
>08_01_0541 +
4702930-4703328,4703411-4703506,4703601-4703649,
4703771-4703865
Length = 212
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 350 PMDFSNARGRTKPLPTA*YSPQASFEEGHVIASGNTVDGSSFHS 219
P + AR + KP P SP + G ASG+ D SF S
Sbjct: 13 PKPRATARAKPKPKPKTKPSPASLLSGGSSPASGDAADDLSFLS 56
>10_02_0172 - 6162692-6163066
Length = 124
Score = 27.1 bits (57), Expect = 6.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +3
Query: 249 SRRYDMSFFKRGLWR---VLSGRQRLGSAPGIT---EVHGRR*PLTIRWAVCSSAYKG 404
S R+D+ F +G WR + RL A V RR L WA C S Y G
Sbjct: 7 SSRFDLVFEMKGRWRREGAAAMAMRLNEAVWHATGGSVWRRRQELAFLWADCESGYDG 64
>07_03_1461 -
26700613-26700621,26700784-26700851,26701778-26701919,
26702011-26702318,26702415-26702481,26702543-26702664,
26702763-26702815,26702924-26703006,26703092-26703160,
26703235-26703633
Length = 439
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = -3
Query: 410 FIALVCRRAYGPPDGEWLPSP-----MDFSNARGRTKPLPT 303
FIA + R P G P P D S A+GR++P+P+
Sbjct: 326 FIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPS 366
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 187 FVEYVFH*KNWYLATSFEHRCIARYEC-TGSLI 92
FV F+ +WYLAT + RC + EC + SLI
Sbjct: 1707 FVALEFY--SWYLATILQSRCGSSQECLSNSLI 1737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,450
Number of Sequences: 37544
Number of extensions: 323690
Number of successful extensions: 728
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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