Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11041
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 33 0.13
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.68
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.68
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.68
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 29 1.2
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 2.1
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 2.1
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 29 2.1
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 29 2.1
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 2.1
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 2.1
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.1
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 29 2.1
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 29 2.1
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 2.1
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.1
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 29 2.1
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 28 2.7
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2) 28 3.6
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 28 3.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 28 3.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 28 3.6
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 27 4.8
SB_45958| Best HMM Match : Peptidase_C42 (HMM E-Value=2.3) 27 4.8
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 27 6.3
SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9) 27 6.3
SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4) 27 6.3
SB_12513| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 27 8.3
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 33.1 bits (72), Expect = 0.096
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTVFPDAMTCPSSNEA 285
+LPR +RLWN LP +V D CP + A
Sbjct: 203 FLPRALRLWNNLPQSVI-DMRGCPEAFHA 230
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 32.7 bits (71), Expect = 0.13
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTVFPDAMTCPSS 276
+LPR +RLWN LP +V D CP +
Sbjct: 202 FLPRALRLWNNLPQSVI-DMRGCPEA 226
>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 31.1 bits (67), Expect = 0.39
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -1
Query: 265 MS*RRETPWTGAHSIAGWYVASKS*TFVEYVFH*KNWYLATSFEHRCIARYEC 107
+S R T + G +S+ GW ++++ T + V+ + W L+T R + +Y+C
Sbjct: 209 LSTRVVTQYKGGYSVQGWLLSTRVVTQYKAVYSVQGWLLST----RVVTQYKC 257
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 30.3 bits (65), Expect = 0.68
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 199 YLPRTIRLWNELPS 240
Y PRT++LWN LPS
Sbjct: 750 YFPRTVKLWNSLPS 763
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 30.3 bits (65), Expect = 0.68
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 199 YLPRTIRLWNELPS 240
Y PRT++LWN LPS
Sbjct: 253 YFPRTVKLWNSLPS 266
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 30.3 bits (65), Expect = 0.68
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 199 YLPRTIRLWNELPS 240
Y PRT++LWN LPS
Sbjct: 253 YFPRTVKLWNSLPS 266
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 175 LRRSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 214
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 850 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 889
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 116 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 150
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 187 MFTIYLPRTIRLWNELPSTVFP 252
+F+ Y RTI +WN LP VFP
Sbjct: 827 LFSFY-SRTIPVWNALPQAVFP 847
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 130 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 169
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 317 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 351
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 303 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 337
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 175 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 214
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 549 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 583
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 523 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 557
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 437 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 476
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 220 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 254
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 84 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 123
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 541 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 580
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 608 RNSHNFKYYQEKATKNKYFYSFFPRTIRHWNTLPN 642
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LPS V
Sbjct: 769 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPSEV 808
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTVFPDAMTCPSSNEA 285
+ PRTIR WN LP+ V +A PS A
Sbjct: 1648 FFPRTIRTWNLLPAEVV-NAADLPSFKSA 1675
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTVFPDAMTCPSSNEA 285
+ PRTIR WN LP+ V +A PS A
Sbjct: 1094 FFPRTIRTWNLLPAEVV-NAADLPSFKSA 1121
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 136 RNSLPGTNFSNEIRTQQMFTIYLPRTIRLWNELPS 240
RNS + + + F + PRTIR WN LP+
Sbjct: 766 RNSHNFKCYQEKATKNKYFYSFFPRTIRHWNTLPN 800
>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
Length = 318
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 310 SGLVLPLALLKSMGDGNHSPSGGP 381
SG+ PLA S D H P GGP
Sbjct: 33 SGIFSPLASSTSASDSRHRPVGGP 56
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTV 246
+ PR IR+WN LPS V
Sbjct: 143 FFPRAIRIWNLLPSNV 158
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTV 246
+ PR IR+WN LPS V
Sbjct: 462 FFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTV 246
+ PR IR+WN LPS V
Sbjct: 1448 FFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTV 246
+ PR IR+WN LPS V
Sbjct: 408 FFPRAIRIWNLLPSNV 423
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 133 VRNSLPGTNFSNEIRTQQMFTIY--LPRTIRLWNELPSTV 246
+R S ++ N+I++ + Y PRTIR WN LP+ V
Sbjct: 216 LRPSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLPAQV 255
>SB_45958| Best HMM Match : Peptidase_C42 (HMM E-Value=2.3)
Length = 116
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 303 RLILSTSLV*RRTC--HSVGKHRGRELIP*PDGTWQVNRKHLLSTY 172
R++ SL+ C +V H GR L+ PDG+W + + ++ Y
Sbjct: 3 RVLARRSLINAHACATKTVSTH-GRALLSLPDGSWYIRHRFPVTVY 47
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 107 AFVSCDAPVFETRCQVPIFLMKYVLNKCLRF 199
A ++ D+P TR QV IFL+K V K F
Sbjct: 3617 AAMTADSPTETTRMQVGIFLLKQVHEKLPMF 3647
>SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 146 CQVPIFLMKYVLNKCLRFTCHV 211
C P F+M YV+N C +C V
Sbjct: 230 CMTPAFVMAYVINFCDTCSCDV 251
>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
Length = 105
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 400 LYADEHTAHLMVSGYRRPWTSVMPGAEPSRCL 305
++ + +T + + +GY ++S PG EP +CL
Sbjct: 10 VFRNNNTEYRLQAGYGLRFSSKRPGYEPGQCL 41
>SB_10164| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
Length = 428
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 GLKDKTSGAFVSCDAPVFETRCQVPI-FLMKYVLNKCLRFTCHVPSGYGMSSRPRCF 250
G +T A + C AP C + + L+ Y +++ LR TCH P G ++ R F
Sbjct: 312 GYMSRTLWAII-CHAP-----CGLQVTHLVGYYMSRTLRATCHAPCGLHVTHTLRGF 362
>SB_12513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 146 NEFRTPVHRTIRMHRKSYPLGHDDFIRLSMVMALTSYQHHGKDP 15
N PVH ++ + + Y + L V L YQH KDP
Sbjct: 12 NSNSRPVHDSLCLQPRIYMVSESTLRILQDVGELRVYQHEDKDP 55
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 199 YLPRTIRLWNELPSTV 246
++PR IRLWN L TV
Sbjct: 748 FVPRAIRLWNSLEVTV 763
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,037
Number of Sequences: 59808
Number of extensions: 357932
Number of successful extensions: 1021
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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