Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV11041
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.9  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 377 PPDGEWLPSPMDFSNARG 324
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 219 PDGTWQVNRKHLLSTYFIR 163
           P   WQ++  HLL+  F++
Sbjct: 105 PHMAWQLSTAHLLAQLFLK 123


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 133 VRNSLPGTNFSNE 171
           ++NSL G NF+N+
Sbjct: 287 LQNSLNGKNFNND 299


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 174 TYSTNVYDLLATYHP 218
           TY  ++YD+  T+ P
Sbjct: 69  TYKNSIYDVSMTFGP 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,056
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)