Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11041
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR... 29 0.97
At3g60040.1 68416.m06705 F-box family protein contains a novel d... 28 2.2
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL... 28 3.0
At4g14160.3 68417.m02185 transport protein, putative similar to ... 27 3.9
At4g14160.2 68417.m02186 transport protein, putative similar to ... 27 3.9
At4g14160.1 68417.m02184 transport protein, putative similar to ... 27 3.9
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 27 5.2
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 27 5.2
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 26 9.0
>At5g46470.1 68418.m05723 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1127
Score = 29.5 bits (63), Expect = 0.97
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 319 PSRCLPLNTLHKPRLKKDMS*RR-ETPWTGAHSIAG 215
PS+CLP N + +K M + E W G HS+AG
Sbjct: 599 PSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAG 634
>At3g60040.1 68416.m06705 F-box family protein contains a novel
domain with similarity to F-box domain;
Length = 838
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 86 LKDKTSGAFVSCDAPVFETRC 148
L D SG F+S DA +F+T C
Sbjct: 209 LHDSVSGTFISMDAKMFDTIC 229
>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
(PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
(EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
{Arabidopsis thaliana}; contains Pfam profiles: PF00614
phospholipase D.active site motif, PF00168 C2 domain
Length = 1083
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 138 SNTGASHDTNAPEVLSFRPRRFHKTVYGNGAYI 40
S TG+ + N P+ LS + RRF V+ G +
Sbjct: 908 SGTGSPSNANTPQALSRKSRRFMVYVHSKGMVV 940
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 412 FLLPLYADEHTAHLMVSGYRRPWTSVMPGAEPSRC 308
FLLP E+T L++ + V PG P RC
Sbjct: 239 FLLPASECEYTLDLLLDELQSDQWPVQPGHRPQRC 273
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 412 FLLPLYADEHTAHLMVSGYRRPWTSVMPGAEPSRC 308
FLLP E+T L++ + V PG P RC
Sbjct: 239 FLLPASECEYTLDLLLDELQSDQWPVQPGHRPQRC 273
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 412 FLLPLYADEHTAHLMVSGYRRPWTSVMPGAEPSRC 308
FLLP E+T L++ + V PG P RC
Sbjct: 239 FLLPASECEYTLDLLLDELQSDQWPVQPGHRPQRC 273
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 286 KPRLKKDMS*RRETPWTGAHSIAGW 212
KP K M+ R + W G S+AGW
Sbjct: 296 KPSTTKHMAQRVDEVWAGMISVAGW 320
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 286 KPRLKKDMS*RRETPWTGAHSIAGW 212
KP K M+ R + W G S+AGW
Sbjct: 296 KPSTTKHMAQRVDEVWAGMISVAGW 320
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 419 FFFFIALVCRRAYGPPDGEWLPSPMDFS---NARGRTKPL 309
F +I + + + DG+W+PS DF+ NARG K L
Sbjct: 1093 FLIYIFTLIQSSITVKDGDWVPS-ADFTSRRNARGSQKDL 1131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,780
Number of Sequences: 28952
Number of extensions: 239199
Number of successful extensions: 601
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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