Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11038
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 100 1e-22
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 100 1e-22
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.4
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 5.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 7.1
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 24 9.4
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 24 9.4
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 24 9.4
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 100 bits (239), Expect = 1e-22
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
D++ PKH E+ +PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP
Sbjct: 26 DFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPA 84
Query: 182 EIVPATLKRSVR 217
E+VPAT KR VR
Sbjct: 85 EVVPATHKRQVR 96
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 100 bits (239), Expect = 1e-22
Identities = 46/72 (63%), Positives = 57/72 (79%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
D++ PKH E+ +PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP
Sbjct: 26 DFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPA 84
Query: 182 EIVPATLKRSVR 217
E+VPAT KR VR
Sbjct: 85 EVVPATHKRQVR 96
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 256 APARSAEDRSAYRRTPAAPGVAPHDKKAD-VGPGSADLEFKGGYGR 390
A R+ R + A G +KK D PG F+GG+GR
Sbjct: 98 AAPRAGRPEPRERSSAADAGYRRAEKKDDGAAPGGFAPSFRGGFGR 143
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 205 ALSTYRDSTPWPCWSSCAPARSAEDRSAYRRTPAAPGVA 321
A+ + R STP +PAR SAY P A G+A
Sbjct: 289 AVGSSRGSTPASATVPISPARGFPTTSAYNPAPPAYGMA 327
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 9 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 101
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 207 RLSVAGTISGGRCKNILKY 151
R+ G+++GG CK LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 367 QDQLSLDQHQPFYH-EVQHQGQQEYVCMQICPQQSGLGHRTTNRATA 230
+D+LS Q E QH+ +E + + + +SG R T RATA
Sbjct: 757 KDRLSTRLQQVLLELEKQHETNEEAMDIDLKVPESGAIGRVTTRATA 803
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 358 LSLDQHQPFYHEVQHQGQQEY 296
L ++QH ++HE Q++ + EY
Sbjct: 164 LDIEQHLQYFHEWQNKPRVEY 184
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 177 LLKLCLQHLSAQYVQRQY 230
LLK+CL +SA Y+ Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 11 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIF 166
AP++T+ + N ++ K + KS + + +W+ T G+EY++ F
Sbjct: 37 APRYTK-SYMHNAEIYKCFPT-KSNYILSVSYDGYVKFWHKTPNGVEYIKEF 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,272
Number of Sequences: 5004
Number of extensions: 29048
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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