Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV11038
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 105 2e-23
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 105 2e-23
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 102 2e-22
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 0.99
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 1.3
06_01_0672 - 4903126-4903219,4903322-4903430,4903620-4905096,490... 29 2.3
03_05_0528 - 25268396-25269217 28 4.0
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 27 5.3
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 7.0
09_03_0062 - 11969719-11970036,11970115-11970843 27 7.0
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 7.0
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 27 7.0
01_01_1180 - 9401669-9402412,9402672-9402698 27 7.0
12_01_0858 + 8072608-8072931,8072990-8073028 27 9.2
04_04_1366 + 32970640-32970981,32971678-32971765,32971919-329720... 27 9.2
01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391 27 9.2
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 105 bits (252), Expect = 2e-23
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
DY+ KH +++ +PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP
Sbjct: 26 DYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPS 84
Query: 182 EIVPATLKRSVR 217
EIVPATLK+S R
Sbjct: 85 EIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 105 bits (252), Expect = 2e-23
Identities = 45/72 (62%), Positives = 61/72 (84%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
DY+ KH +++ +PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP
Sbjct: 26 DYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPS 84
Query: 182 EIVPATLKRSVR 217
EIVPATLK+S R
Sbjct: 85 EIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 102 bits (244), Expect = 2e-22
Identities = 42/72 (58%), Positives = 60/72 (83%)
Frame = +2
Query: 2 DYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP 181
DY+ KH +++ +PNL+VIK MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR +L+LP
Sbjct: 26 DYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPS 84
Query: 182 EIVPATLKRSVR 217
E+VP TLK+S +
Sbjct: 85 EVVPNTLKKSAK 96
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 0.99
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 262 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 393
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 268 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 399
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>06_01_0672 -
4903126-4903219,4903322-4903430,4903620-4905096,
4906200-4906538
Length = 672
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 211 STYRDSTPWPCWSSCAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 360
+T R +TP P ++ +P S+ + A RR P P +K + P +A
Sbjct: 145 TTPRTTTPSPAGAAASPRLSSSNPDARRRAPPQPEPPSTPRKENRVPSAA 194
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 349 PGSADLEFKGGYGRG 393
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 238 PCWSSCAPARSAEDRSAYRRTPAAPGVAP--HDKKADVGPGSADLEFKGGYGRG 393
P ++ APA + +AY PAAP VAP D G G GG+GRG
Sbjct: 25 PVLAASAPAAANPYAAAYAPAPAAP-VAPAGGDFSRFGGRGRGGGAGGGGWGRG 77
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 226 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 134
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 149 QYPHWLGTSKSASRQ 105
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 193 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 74
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +1
Query: 238 PCWSSCAPA-RSAEDRSAYRRTPAAPGVAPH 327
P WS C PA R+A+ PA+ G + H
Sbjct: 19 PRWSPCTPAGADGSGRAAHATPPASGGCSSH 49
>01_01_1180 - 9401669-9402412,9402672-9402698
Length = 256
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 247 SSCAPARSAEDRSAYRRTPAAP 312
SS APA +A+ RSA T AAP
Sbjct: 96 SSAAPAAAADPRSALTATTAAP 117
>12_01_0858 + 8072608-8072931,8072990-8073028
Length = 120
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 350 GPTSAFLS*GATPGAAGVRLYADLSSAERAGA 255
GP+SA +S G AG + AD + RAGA
Sbjct: 49 GPSSARISVDPAAGTAGAAVAADGQARARAGA 80
>04_04_1366 +
32970640-32970981,32971678-32971765,32971919-32972014,
32972583-32972593
Length = 178
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 323 GATPGAAG--VRLYADLSSAERAGAQ 252
G GAAG RL ADL +AERA A+
Sbjct: 76 GGAGGAAGELARLAADLGAAERADAE 101
>01_05_0402 + 21810906-21811831,21811875-21812472,21813119-21813391
Length = 598
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 322 VQHQGQQEYVCMQICPQQSGLGHRTTNRATAY 227
++H +YV +++ P Q H +N+AT +
Sbjct: 230 LRHNDYYDYVLVELFPHQDSRTHLASNKATLF 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,504
Number of Sequences: 37544
Number of extensions: 209111
Number of successful extensions: 669
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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